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小麦基因家族的全基因组鉴定和表达分析。

Genome-Wide Identification and Expression Analysis of Gene Family in Wheat.

机构信息

Key Laboratory of Molecular Cytogenetics and Genetic Breeding of Heilongjiang Province, College of Life Science and Technology, Harbin Normal University, Harbin 150025, China.

出版信息

Genes (Basel). 2024 Oct 11;15(10):1311. doi: 10.3390/genes15101311.

Abstract

: The gene family is a class of proteins containing a SNAP domain, which plays a crucial role in the growth and development of plants. : Bioinformatics methods were used to systematically analyze the gene structure, phylogenetic evolution, chromosomal distribution, physicochemical properties, conserved motifs, and cis-acting elements of the family members. : The family comprises members that encode proteins ranging between 120 and 276 amino acids, with isoelectric points spanning from 4.87 to 7.92. Phylogenetic analysis elucidated the categorization of the eight into three distinct subfamilies, wherein members of the same subfamily display marked similarities in their gene structures. Chromosomal mapping revealed the distribution of family members across chromosomes 2A, 2B, 2D, 7A, 7B, and 7D. Utilizing the Plant CARE tool, we identified ten elements linked to plant hormones and four associated with stress responses. Expression analysis via qRT-PCR was performed to assess the levels of the eight genes in various tissues and under diverse abiotic stress conditions. The results indicated heightened expression of most genes in roots compared to spikes. Notably, under ABA stress, the majority of genes exhibited upregulation, whereas certain genes were downregulated under PEG stress, implying a substantial role for SNAP protein in wheat growth and development. : This study conducted a comprehensive bioinformatics analysis of each member of the wheat family, laying a crucial foundation for future functional investigations.

摘要

: 该基因家族是一类含有 SNAP 结构域的蛋白质,在植物的生长和发育中起着至关重要的作用。: 利用生物信息学方法,系统分析了 家族成员的基因结构、系统进化、染色体分布、理化性质、保守基序和顺式作用元件。: 该家族包含编码 120 到 276 个氨基酸的蛋白质的成员,等电点范围为 4.87 到 7.92。系统进化分析将 8 个 分为三个不同的亚家族,同一亚家族的成员在基因结构上具有显著的相似性。染色体定位显示 家族成员分布在 2A、2B、2D、7A、7B 和 7D 染色体上。利用 Plant CARE 工具,我们鉴定了与植物激素相关的 10 个元件和与应激反应相关的 4 个元件。通过 qRT-PCR 进行表达分析,评估了 8 个 基因在不同组织和各种非生物胁迫条件下的表达水平。结果表明,大多数基因在根部的表达水平高于穗部。值得注意的是,在 ABA 胁迫下,大多数基因上调表达,而在 PEG 胁迫下,某些基因下调表达,这表明 SNAP 蛋白在小麦的生长和发育中起着重要作用。: 本研究对小麦 家族的每个成员进行了全面的生物信息学分析,为今后的功能研究奠定了重要基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2eba/11507394/40c3b5d5db00/genes-15-01311-g001.jpg

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