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基于YOLOv5s的小麦不同生育期条锈病和叶锈病图像识别

YOLOv5s-Based Image Identification of Stripe Rust and Leaf Rust on Wheat at Different Growth Stages.

作者信息

Jiang Qian, Wang Hongli, Sun Zhenyu, Cao Shiqin, Wang Haiguang

机构信息

College of Plant Protection, China Agricultural University, Beijing 100193, China.

Institute of Plant Protection, Gansu Academy of Agricultural Sciences, Lanzhou 730070, China.

出版信息

Plants (Basel). 2024 Oct 10;13(20):2835. doi: 10.3390/plants13202835.

DOI:10.3390/plants13202835
PMID:39458782
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11511414/
Abstract

Stripe rust caused by f. sp. and leaf rust caused by , are two devastating diseases on wheat, which seriously affect the production safety of wheat. Timely detection and identification of the two diseases are essential for taking effective disease management measures to reduce wheat yield losses. To realize the accurate identification of wheat stripe rust and wheat leaf rust during the different growth stages, in this study, the image-based identification of wheat stripe rust and wheat leaf rust during different growth stages was investigated based on deep learning using image processing technology. Based on the YOLOv5s model, we built identification models of wheat stripe rust and wheat leaf rust during the seedling stage, stem elongation stage, booting stage, inflorescence emergence stage, anthesis stage, milk development stage, and all the growth stages. The models were tested on the different testing sets in the different individual growth stages and in all the growth stages. The results showed that the models performed differently in disease image identification. The model based on the disease images acquired during an individual growth stage was not suitable for the identification of the disease images acquired during the other individual growth stages, except for the model based on the disease images acquired during the milk development stage, which had acceptable identification performance on the testing sets in the anthesis stage and the milk development stage. In addition, the results demonstrated that wheat growth stages had a great influence on the image identification of the two diseases. The model built based on the disease images acquired in all the growth stages produced acceptable identification results. Mean F1 Score values between 64.06% and 79.98% and mean average precision (mAP) values between 66.55% and 82.80% were achieved on each testing set composed of the disease images acquired during an individual growth stage and on the testing set composed of the disease images acquired during all the growth stages. This study provides a basis for the image-based identification of wheat stripe rust and wheat leaf rust during the different growth stages, and it provides a reference for the accurate identification of other plant diseases.

摘要

由条形柄锈菌小麦专化型(Puccinia striiformis f. sp. tritici)引起的条锈病和由叶锈菌(Puccinia triticina)引起的叶锈病是小麦上的两种毁灭性病害,严重影响小麦的生产安全。及时检测和识别这两种病害对于采取有效的病害管理措施以减少小麦产量损失至关重要。为了实现小麦条锈病和叶锈病在不同生长阶段的准确识别,本研究基于深度学习并利用图像处理技术,对不同生长阶段小麦条锈病和叶锈病的图像识别进行了研究。基于YOLOv5s模型,我们构建了小麦条锈病和叶锈病在苗期、拔节期、孕穗期、抽穗期、开花期、灌浆期以及所有生长阶段的识别模型。这些模型在不同个体生长阶段以及所有生长阶段的不同测试集上进行了测试。结果表明,这些模型在病害图像识别中的表现各不相同。基于单个生长阶段获取的病害图像构建的模型不适用于识别其他单个生长阶段获取的病害图像,不过基于灌浆期获取的病害图像构建的模型在开花期和灌浆期的测试集上具有可接受的识别性能。此外,结果表明小麦生长阶段对这两种病害的图像识别有很大影响。基于所有生长阶段获取的病害图像构建的模型产生了可接受的识别结果。在由单个生长阶段获取的病害图像组成的每个测试集以及由所有生长阶段获取的病害图像组成的测试集上,平均F1分数值在64.06%至79.98%之间,平均精度均值(mAP)值在66.55%至82.80%之间。本研究为不同生长阶段小麦条锈病和叶锈病的图像识别提供了依据,并为其他植物病害的准确识别提供了参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff1c/11511414/e538a58968f8/plants-13-02835-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff1c/11511414/85129e7ef66f/plants-13-02835-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff1c/11511414/e538a58968f8/plants-13-02835-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff1c/11511414/85129e7ef66f/plants-13-02835-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff1c/11511414/e538a58968f8/plants-13-02835-g002.jpg

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本文引用的文献

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PeerJ Comput Sci. 2023 Sep 25;9:e1595. doi: 10.7717/peerj-cs.1595. eCollection 2023.
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ALAD-YOLO:an lightweight and accurate detector for apple leaf diseases.ALAD-YOLO:一种用于苹果叶部病害的轻量级高精度检测器。
Front Plant Sci. 2023 Aug 17;14:1204569. doi: 10.3389/fpls.2023.1204569. eCollection 2023.
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An automatic identification system for citrus greening disease (Huanglongbing) using a YOLO convolutional neural network.
一种使用YOLO卷积神经网络的柑橘黄龙病自动识别系统。
Front Plant Sci. 2022 Dec 20;13:1002606. doi: 10.3389/fpls.2022.1002606. eCollection 2022.
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Mobile application using DCDM and cloud-based automatic plant disease detection.基于 DCDM 和云的移动应用程序,用于自动植物病害检测。
Environ Monit Assess. 2022 Oct 28;195(1):44. doi: 10.1007/s10661-022-10561-3.
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Image Classification of Wheat Rust Based on Ensemble Learning.基于集成学习的小麦锈病图像分类。
Sensors (Basel). 2022 Aug 12;22(16):6047. doi: 10.3390/s22166047.
6
Identification of Alfalfa Leaf Diseases Using Image Recognition Technology.利用图像识别技术鉴定苜蓿叶部病害
PLoS One. 2016 Dec 15;11(12):e0168274. doi: 10.1371/journal.pone.0168274. eCollection 2016.
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Using Deep Learning for Image-Based Plant Disease Detection.利用深度学习进行基于图像的植物病害检测。
Front Plant Sci. 2016 Sep 22;7:1419. doi: 10.3389/fpls.2016.01419. eCollection 2016.
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Role of Alternate Hosts in Epidemiology and Pathogen Variation of Cereal Rusts.替代宿主在麦类锈病流行病学和病原体变异中的作用。
Annu Rev Phytopathol. 2016 Aug 4;54:207-28. doi: 10.1146/annurev-phyto-080615-095851. Epub 2016 Jan 1.
9
Wheat stripe (yellow) rust caused by Puccinia striiformis f. sp. tritici.由条形柄锈菌小麦专化型引起的小麦条锈病(又称小麦黄锈病)
Mol Plant Pathol. 2014 Jun;15(5):433-46. doi: 10.1111/mpp.12116.
10
Century-old mystery of Puccinia striiformis life history solved with the identification of Berberis as an alternate host.百年未解之谜:条锈菌生活史之谜因鉴定小檗为其转主寄主而破解。
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