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基于 RPA-CRISPR/Cas12a 平台的快速超敏检测。

Rapid and Ultrasensitive Detection of via the RPA-CRISPR/Cas12a Platform.

机构信息

College of Life Sciences, China Jiliang University, Hangzhou 310018, China.

Zhejiang Museum of Natural History, Hangzhou 310018, China.

出版信息

Molecules. 2024 Oct 10;29(20):4789. doi: 10.3390/molecules29204789.

Abstract

is one of six pathogens responsible for human anisakiasis. Infection with can cause acute abdominal symptoms and allergic reactions and is prone to misdiagnosis in clinical practice. This study aims to enhance the efficiency and accuracy of detecting in food ingredients. We targeted the internal transcribed spacer 1 (ITS 1) regions of to develop a visual screening method for detecting using recombinase polymerase amplification (RPA) combined with the CRISPR/Cas12a system. By comparing the ITS 1 region sequences of eight nematode species, we designed specific primers and CRISPR RNA (crRNA). The specificity of RPA primers was screened and evaluated, and the CRISPR system was optimized. We assessed its specificity and sensitivity and performed testing on commercial samples. The results indicated that the alternative primer ADU 1 was the most effective. The final optimized concentrations were 250 nM for Cas12a, 500 nM for crRNA, and 500 nM for ssDNA. The complete test procedure was achievable within 45 min at 37 °C, with a limit of detection (LOD) of 1.27 pg/μL. The amplified product could be directly observed using a fluorescence microscope or ultraviolet lamp. Detection results for 15 samples were entirely consistent with those obtained via Sanger sequencing, demonstrating the higher efficacy of this method for detecting and identifying . This visual detection method, characterized by simple operation, visual results, high sensitivity, and specificity, meets the requirements for food safety testing and enhances monitoring efficiency.

摘要

是导致人体异尖线虫病的六种病原体之一。感染 可引起急性腹部症状和过敏反应,在临床实践中容易误诊。本研究旨在提高在食品成分中检测 的效率和准确性。我们针对 的内部转录间隔区 1(ITS 1)区域,开发了一种使用重组酶聚合酶扩增(RPA)结合 CRISPR/Cas12a 系统检测 的可视化筛选方法。通过比较八种线虫物种的 ITS 1 区域序列,我们设计了特异性引物和 CRISPR RNA(crRNA)。筛选和评估了 RPA 引物的特异性,并对 CRISPR 系统进行了优化。我们评估了它的特异性和灵敏度,并对商业样本进行了测试。结果表明,替代引物 ADU 1 最为有效。最终优化的浓度分别为 Cas12a 250 nM、crRNA 500 nM 和 ssDNA 500 nM。在 37°C 下,整个测试过程可在 45 分钟内完成,检测限(LOD)为 1.27 pg/μL。扩增产物可直接用荧光显微镜或紫外线灯观察。对 15 个样品的检测结果与 Sanger 测序完全一致,表明该方法在检测和鉴定 方面具有更高的功效。这种可视化检测方法具有操作简单、结果直观、灵敏度和特异性高的特点,满足食品安全检测的要求,提高了监测效率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2897/11510235/c2aedeb12bcd/molecules-29-04789-g001.jpg

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