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用于猪轮状病毒快速现场检测及可视化的CRISPR-Cas12a/RPA双读出检测法

CRISPR-Cas12a/RPA Dual-Readout Assay for Rapid Field Detection of Porcine Rotavirus with Visualization.

作者信息

Jiang Xinjie, Huang Yun, Jiang Yi, Yang Guang, Zheng Xiaocong, Gao Shuai

机构信息

Hainan Laboratory Animal Research Center, Sanya Institute of Hainan Academy of Agricultural Sciences, Sanya 572000, China.

Animal and Plant Inspection and Quarantine Technology Center of Shenzhen Customs, Shenzhen 518045, China.

出版信息

Viruses. 2025 Jun 20;17(7):872. doi: 10.3390/v17070872.

DOI:10.3390/v17070872
PMID:40733490
Abstract

PoRV is a significant etiological agent of neonatal diarrhea in piglets, resulting in substantial economic losses within the global swine industry due to elevated mortality rates and reduced productivity. To address the urgent need for accessible and rapid diagnostics in resource-limited settings, we have developed a CRISPR/Cas12a-based assay integrated with recombinase polymerase amplification (RPA) for the visual detection of PoRV. This platform specifically targets the conserved VP6 gene using optimized RPA primers and crRNA, harnessing Cas12a's collateral cleavage activity to enable dual-readout via fluorescence or lateral flow dipsticks (LFDs). The assay demonstrates a detection limit of 10 copies/μL within 1 h, exhibiting no cross-reactivity with phylogenetically related pathogens such as Transmissible Gastroenteritis Virus (TGEV). By eliminating reliance on thermal cyclers or specialized equipment, this method is fully deployable in swine farms, veterinary clinics, or field environments. The lateral flow format provides immediate colorimetric results that require minimal technical expertise, while the fluorescence mode allows for semi-quantitative analysis. This study presents a robust and cost-effective platform for decentralized PoRV surveillance in swine populations, addressing the critical need for portable diagnostics in resource-limited settings and enhancing veterinary health management.

摘要

猪轮状病毒(PoRV)是仔猪新生腹泻的重要病原体,由于死亡率上升和生产力下降,给全球养猪业造成了巨大经济损失。为满足资源有限地区对便捷快速诊断的迫切需求,我们开发了一种基于CRISPR/Cas12a的检测方法,该方法与重组酶聚合酶扩增(RPA)相结合,用于PoRV的可视化检测。该平台使用优化的RPA引物和crRNA特异性靶向保守的VP6基因,利用Cas12a的附带切割活性通过荧光或侧向流动试纸条(LFD)进行双读出。该检测方法在1小时内检测限为10拷贝/μL,与系统发育相关病原体如传染性胃肠炎病毒(TGEV)无交叉反应。通过消除对热循环仪或专用设备的依赖,该方法可在养猪场、兽医诊所或野外环境中全面应用。侧向流动形式可立即提供比色结果,所需技术专业知识最少,而荧光模式则允许进行半定量分析。本研究为猪群中PoRV的分散监测提供了一个强大且经济高效的平台,满足了资源有限地区对便携式诊断的迫切需求,并加强了兽医健康管理。

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本文引用的文献

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Phylogenitc analysis and immunogenicity comparison of porcine genotype G9 rotavirus in China from 2020-2023.2020-2023年中国猪源G9基因型轮状病毒的系统发育分析及免疫原性比较
Virol Sin. 2025 Apr;40(2):176-185. doi: 10.1016/j.virs.2025.02.003. Epub 2025 Feb 21.
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Development and Validation of RAA-CRISPR/Cas12a-Based Assay for Detecting Porcine Rotavirus.基于RAA-CRISPR/Cas12a的猪轮状病毒检测方法的建立与验证
Animals (Basel). 2024 Nov 25;14(23):3387. doi: 10.3390/ani14233387.
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人类和动物轮状病毒疫苗的最新进展洞察:探索新领域
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Rapid and Ultrasensitive Detection of via the RPA-CRISPR/Cas12a Platform.基于 RPA-CRISPR/Cas12a 平台的快速超敏检测。
Molecules. 2024 Oct 10;29(20):4789. doi: 10.3390/molecules29204789.
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Dual Detection of Hepatitis B and C Viruses Using CRISPR-Cas Systems and Lateral Flow Assay.使用CRISPR-Cas系统和侧向流动分析法对乙型和丙型肝炎病毒进行双重检测
J Nucleic Acids. 2024 Oct 5;2024:8819834. doi: 10.1155/2024/8819834. eCollection 2024.
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A novel double antibody sandwich quantitative ELISA for detecting porcine epidemic diarrhea virus infection.用于检测猪流行性腹泻病毒感染的新型双抗体夹心定量 ELISA 方法。
Appl Microbiol Biotechnol. 2024 Oct 8;108(1):482. doi: 10.1007/s00253-024-13321-0.
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Development of RPA-Cas12a assay for rapid and sensitive detection of Pneumocystis jirovecii.开发 RPA-Cas12a assay 用于快速灵敏检测肺孢子菌。
BMC Microbiol. 2024 Aug 26;24(1):314. doi: 10.1186/s12866-024-03440-z.
8
Rapid, portable, and sensitive detection of CaMV35S by RPA-CRISPR/Cas12a-G4 colorimetric assays with high accuracy deep learning object recognition and classification.利用 RPA-CRISPR/Cas12a-G4 比色分析,通过高精度深度学习目标识别和分类,快速、便携、灵敏地检测 CaMV35S。
Talanta. 2024 Oct 1;278:126441. doi: 10.1016/j.talanta.2024.126441. Epub 2024 Jun 20.
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