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中国海南地区橘点石斑鱼虹彩病毒的分离、鉴定与基因组分析。

Isolation, Identification and Genomic Analysis of Orange-Spotted Grouper Iridovirus Hainan Strain in China.

机构信息

College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China.

Guangdong Winsun Biological Pharmaceutical Co., Ltd., Guangzhou 511356, China.

出版信息

Viruses. 2024 Sep 24;16(10):1513. doi: 10.3390/v16101513.

Abstract

The orange-spotted grouper () is an important mariculture fish in China. However, in recent years, with the rapid development of aquaculture activities, outbreaks of viral diseases have affected the grouper aquaculture industry, causing severe economic losses. In the present study, we isolated and identified a virus from diseased, orange-spotted groupers from an aquaculture farm in Hainan Province, China. The isolated virus was identified as orange-spotted grouper iridovirus, hence named the orange-spotted grouper iridovirus Hainan strain (OSGIV-HN-2018-001). OSGIV-HN-2018-001 induces a cytopathic effect after the infection of mandarin fish () brain clonal passage (SBC) cells. In addition, the cytoplasm of the OSGIV-HN-2018-001-infected SBC cells was found to contain a large number of hexagonal virus particles with a diameter of approximately 134 nm. Using the Illumina NovaSeq system, we assembled the sequence data and annotated the complete genome of OSGIV-HN-2018-001 (GenBank accession number: PP974677), which consisted of 110,699 bp and contained 122 open reading frames (ORFs). Phylogenetic tree analysis showed that OSGIV-HN-2018-001 was most closely related to ISKNV-ASB-23. The cumulative mortality rate of groupers infected with OSGIV-HN-2018-001 reached 100% on day 8. The spleens were enlarged and blackened after the dissection of the dying groupers. These results contribute to the understanding of the molecular regulatory mechanism of the iridovirus infection and provide a basis for iridovirus prevention.

摘要

橙色斑点石斑鱼()是中国重要的海水养殖鱼类。然而,近年来,随着水产养殖活动的快速发展,病毒性疾病的爆发对石斑鱼养殖业造成了严重的经济损失。本研究从中国海南省一个养殖场的患病橙色斑点石斑鱼中分离并鉴定了一种病毒。分离出的病毒被鉴定为橙色斑点石斑鱼虹彩病毒,因此命名为橙色斑点石斑鱼虹彩病毒海南株(OSGIV-HN-2018-001)。OSGIV-HN-2018-001 感染尖吻鲈脑克隆传代(SBC)细胞后会引起细胞病变效应。此外,OSGIV-HN-2018-001 感染的 SBC 细胞质中发现含有大量直径约为 134nm 的六边型病毒粒子。使用 Illumina NovaSeq 系统,我们组装了序列数据并注释了 OSGIV-HN-2018-001 的完整基因组(GenBank 登录号:PP974677),该基因组由 110699bp 组成,包含 122 个开放阅读框(ORFs)。系统进化树分析表明,OSGIV-HN-2018-001 与 ISKNV-ASB-23 最为密切相关。感染 OSGIV-HN-2018-001 的石斑鱼累积死亡率在第 8 天达到 100%。死亡石斑鱼解剖后,脾脏肿大且变黑。这些结果有助于了解虹彩病毒感染的分子调控机制,并为虹彩病毒预防提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f36d/11512321/ab7d79c4f349/viruses-16-01513-g001.jpg

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