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卫星 DNA 在柳紫闪蛱蝶属蝴蝶中的爆发及其在染色体进化中的可能作用。

The burst of satellite DNA in Leptidea wood white butterflies and their putative role in karyotype evolution.

机构信息

Departamento de Biologia Geral e Aplicada, UNESP - Univ Estadual Paulista, Instituto de Biociências/IB, Rio Claro, São Paulo 13506-900, Brazil.

Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Branišovká 31, 370 05 České Budějovice, Czech Republic.

出版信息

DNA Res. 2024 Dec 1;31(6). doi: 10.1093/dnares/dsae030.

DOI:10.1093/dnares/dsae030
PMID:39460673
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11565590/
Abstract

Satellite DNAs (satDNAs) are abundant components of eukaryotic genomes, playing pivotal roles in chromosomal organization, genome stability, and evolution. Here, we combined cytogenetic and genomic methods to characterize the satDNAs in the genomes of Leptidea butterflies. Leptidea is characterized by the presence of a high heterochromatin content, large genomes, and extensive chromosomal reshuffling as well as the occurrence of cryptic species. We show that, in contrast to other Lepidoptera, satDNAs constitute a considerable proportion of Leptidea genomes, ranging between 4.11% and 11.05%. This amplification of satDNAs, together with the hyperactivity of transposable elements, contributes to the substantial genome expansion in Leptidea. Using chromosomal mapping, we show that, particularly LepSat01-100 and LepSat03-167 satDNAs, are preferentially localized in heterochromatin exhibiting variable distribution that may have contributed to the highly diverse karyotypes within the genus. The satDNAs also exhibit W-chromosome accumulation, suggesting their involvement in sex chromosome evolution. Our results provide insights into the dynamics of satDNAs in Lepidoptera genomes and highlight their role in genome expansion and chromosomal organization, which could influence the speciation process. The high proportion of repetitive DNAs in the genomes of Leptidea underscores the complex evolutionary dynamics revealing the interplay between repetitive DNAs and genomic architecture in the genus.

摘要

卫星 DNA(satDNA)是真核生物基因组的丰富组成部分,在染色体组织、基因组稳定性和进化中发挥着关键作用。在这里,我们结合细胞遗传学和基因组学方法来描述蝴蝶属 Leptidea 基因组中的 satDNA。Leptidea 的特点是存在大量的异染色质、大的基因组以及广泛的染色体重排,同时还存在隐种。我们表明,与其他鳞翅目昆虫不同,satDNA 在 Leptidea 基因组中占有相当大的比例,范围在 4.11%到 11.05%之间。这种 satDNA 的扩增,加上转座元件的过度活跃,导致 Leptidea 基因组的大幅扩张。通过染色体作图,我们表明,特别是 LepSat01-100 和 LepSat03-167 satDNA,优先定位于具有可变分布的异染色质中,这可能有助于该属中高度多样化的染色体组型。satDNA 还表现出 W 染色体的积累,表明它们参与了性染色体的进化。我们的研究结果为了解鳞翅目基因组中 satDNA 的动态提供了线索,并强调了它们在基因组扩张和染色体组织中的作用,这可能影响物种形成过程。Leptidea 基因组中重复 DNA 的高比例突出了复杂的进化动态,揭示了重复 DNA 与基因组结构在该属中的相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/323d79f52ba3/dsae030_fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/116c83616e75/dsae030_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/d0fb9640e637/dsae030_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/5239301bc49c/dsae030_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/5926886ace30/dsae030_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/323d79f52ba3/dsae030_fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/116c83616e75/dsae030_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/d0fb9640e637/dsae030_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/5239301bc49c/dsae030_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/5926886ace30/dsae030_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f905/11565590/323d79f52ba3/dsae030_fig5.jpg

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