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异染色质并非卫星DNA的唯一所在:甲虫(鞘翅目,叶甲科)常染色质中卫星DNA的高度多样性

Heterochromatin Is Not the Only Place for satDNAs: The High Diversity of satDNAs in the Euchromatin of the Beetle (Coleoptera, Chrysomelidae).

作者信息

Rico-Porras José M, Mora Pablo, Palomeque Teresa, Montiel Eugenia E, Cabral-de-Mello Diogo C, Lorite Pedro

机构信息

Department of Experimental Biology, Genetics Area, University of Jaén, Paraje las Lagunillas s/n, 23071 Jaén, Spain.

Department of Biology, Genetics, Faculty of Sciences, Autonomous University of Madrid, 28049 Madrid, Spain.

出版信息

Genes (Basel). 2024 Mar 22;15(4):395. doi: 10.3390/genes15040395.

DOI:10.3390/genes15040395
PMID:38674330
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11049206/
Abstract

The satellitome of the beetle Linneo, 1758 has been characterized through chromosomal analysis, genomic sequencing, and bioinformatics tools. C-banding reveals the presence of constitutive heterochromatin blocks enriched in A+T content, primarily located in pericentromeric regions. Furthermore, a comprehensive satellitome analysis unveils the extensive diversity of satellite DNA families within the genome of . Using fluorescence in situ hybridization techniques and the innovative CHRISMAPP approach, we precisely map the localization of satDNA families on assembled chromosomes, providing insights into their organization and distribution patterns. Among the 165 identified satDNA families, only three of them exhibit a remarkable amplification and accumulation, forming large blocks predominantly in pericentromeric regions. In contrast, the remaining, less abundant satDNA families are dispersed throughout euchromatic regions, challenging the traditional association of satDNA with heterochromatin. Overall, our findings underscore the complexity of repetitive DNA elements in the genome of and emphasize the need for further exploration to elucidate their functional significance and evolutionary implications.

摘要

对1758年命名的甲虫的卫星基因组进行了染色体分析、基因组测序和生物信息学工具表征。C带显示存在富含A+T含量的组成型异染色质块,主要位于着丝粒周围区域。此外,全面的卫星基因组分析揭示了该基因组内卫星DNA家族的广泛多样性。利用荧光原位杂交技术和创新的CHRISMAPP方法,我们精确地绘制了卫星DNA家族在组装染色体上的定位,深入了解了它们的组织和分布模式。在165个已鉴定的卫星DNA家族中,只有三个表现出显著的扩增和积累,主要在着丝粒周围区域形成大片段。相比之下,其余数量较少的卫星DNA家族则分散在常染色质区域,这对卫星DNA与异染色质的传统关联提出了挑战。总体而言,我们的研究结果强调了该基因组中重复DNA元件的复杂性,并强调需要进一步探索以阐明它们的功能意义和进化影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/0cbb389872ac/genes-15-00395-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/feacb1660e68/genes-15-00395-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/1177bcf3461b/genes-15-00395-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/541a3228a9ab/genes-15-00395-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/4fe9fb21c591/genes-15-00395-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/0c65ab8796ca/genes-15-00395-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/0cbb389872ac/genes-15-00395-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/feacb1660e68/genes-15-00395-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/1177bcf3461b/genes-15-00395-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/541a3228a9ab/genes-15-00395-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/4fe9fb21c591/genes-15-00395-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/0c65ab8796ca/genes-15-00395-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6429/11049206/0cbb389872ac/genes-15-00395-g006.jpg

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