Human Biology Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Molecular and Cellular Biology Graduate Program, University of Washington, Seattle, Washington, United States of America.
PLoS Pathog. 2024 Oct 28;20(10):e1012650. doi: 10.1371/journal.ppat.1012650. eCollection 2024 Oct.
The recurring spillover of pathogenic coronaviruses and demonstrated capacity of sarbecoviruses, such SARS-CoV-2, to rapidly evolve in humans underscores the need to better understand immune responses to this virus family. For this purpose, we characterized the functional breadth and potency of antibodies targeting the receptor binding domain (RBD) of the spike glycoprotein that exhibited cross-reactivity against SARS-CoV-2 variants, SARS-CoV-1 and sarbecoviruses from diverse clades and animal origins with spillover potential. One neutralizing antibody, C68.61, showed remarkable neutralization breadth against both SARS-CoV-2 variants and viruses from different sarbecovirus clades. C68.61, which targets a conserved RBD class 5 epitope, did not select for escape variants of SARS-CoV-2 or SARS-CoV-1 in culture nor have predicted escape variants among circulating SARS-CoV-2 strains, suggesting this epitope is functionally constrained. We identified 11 additional SARS-CoV-2/SARS-CoV-1 cross-reactive antibodies that target the more sequence conserved class 4 and class 5 epitopes within RBD that show activity against a subset of diverse sarbecoviruses with one antibody binding every single sarbecovirus RBD tested. A subset of these antibodies exhibited Fc-mediated effector functions as potent as antibodies that impact infection outcome in animal models. Thus, our study identified antibodies targeting conserved regions across SARS-CoV-2 variants and sarbecoviruses that may serve as therapeutics for pandemic preparedness as well as blueprints for the design of immunogens capable of eliciting cross-neutralizing responses.
致病性冠状病毒的反复溢出以及 SARS-CoV-2 等沙贝科病毒在人类中迅速进化的能力表明,有必要更好地了解人体对这种病毒家族的免疫反应。为此,我们对靶向刺突糖蛋白受体结合域(RBD)的抗体的功能广度和效力进行了表征,这些抗体对 SARS-CoV-2 变体、SARS-CoV-1 和来自不同进化枝和具有溢出潜力的动物起源的沙贝科病毒具有交叉反应性。一种中和抗体 C68.61 对 SARS-CoV-2 变体和来自不同沙贝科病毒进化枝的病毒表现出显著的中和广度。C68.61 靶向保守的 RBD 第 5 类表位,在培养中既未选择 SARS-CoV-2 或 SARS-CoV-1 的逃逸变体,也未预测到循环中的 SARS-CoV-2 株中的逃逸变体,表明该表位受到功能限制。我们鉴定了 11 种额外的 SARS-CoV-2/SARS-CoV-1 交叉反应性抗体,这些抗体靶向 RBD 中更保守的第 4 类和第 5 类表位,对一组不同的沙贝科病毒具有活性,其中一种抗体结合了测试的每一种沙贝科病毒 RBD。这些抗体中的一部分具有与在动物模型中影响感染结果的抗体一样有效的 Fc 介导的效应功能。因此,我们的研究鉴定了针对 SARS-CoV-2 变体和沙贝科病毒保守区域的抗体,这些抗体可能作为大流行防范的治疗方法,以及设计能够引发交叉中和反应的免疫原的蓝图。