• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在与死亡结构域(CADD)相关的衣原体蛋白 - 氨基苯甲酸合酶中组装异双金属 Fe/Mn 辅因子,引发长程自由基空穴跳跃。

Assembly of a Heterobimetallic Fe/Mn Cofactor in the -Aminobenzoate Synthase Chlamydia Protein Associating with Death Domains (CADD) Initiates Long-Range Radical Hole-Hopping.

机构信息

Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.

The Molecular Education, Technology and Research Innovation Center (METRIC), North Carolina State University, Raleigh, North Carolina 27695, United States.

出版信息

Biochemistry. 2024 Nov 19;63(22):3020-3029. doi: 10.1021/acs.biochem.4c00326. Epub 2024 Oct 29.

DOI:10.1021/acs.biochem.4c00326
PMID:39471288
Abstract

Chlamydia protein associating with death domains (CADD) is involved in the biosynthesis of -aminobenzoic acid (pABA) for integration into folate, a critical cofactor that is required for pathogenic survival. CADD activates dioxygen and utilizes its own tyrosine and lysine as synthons to furnish the carboxylate, carbon backbone, and amine group of pABA in a complex multistep mechanism. Unlike other members of the heme oxygenase-like dimetal oxidase (HDO) superfamily that typically house an Fe cofactor, previous activity studies have shown that CADD likely uses a heterobimetallic Fe/Mn center. The structure of the Fe/Mn cofactor and how the conserved HDO scaffold mediates metal selectivity have remained enigmatic. Adopting an metalation approach, CADD was solved in the apo, Fe, Mn, and catalytically active Fe/Mn forms to identify the probable site for Mn binding. The analysis of CADD active-site variants further reinforces the importance of the secondary coordination sphere on cofactor preference for competent pABA formation. Rapid kinetic optical and electron paramagnetic resonance (EPR) studies show that the heterobimetallic cofactor selectively reacts with dioxygen and likely initiates pABA assembly through the formation of a transient tyrosine radical intermediate and a resultant heterobimetallic Mn/Fe cluster.

摘要

与死亡结构域(CADD)相关的衣原体蛋白参与 -氨基苯甲酸(pABA)的生物合成,以整合到叶酸中,叶酸是一种关键的辅因子,是致病生存所必需的。CADD 激活二氧化物,并利用其自身的酪氨酸和赖氨酸作为合成子,在复杂的多步机制中提供 pABA 的羧酸盐、碳骨架和胺基。与通常含有 Fe 辅因子的血红素加氧酶样双金属氧化酶(HDO)超家族的其他成员不同,先前的活性研究表明,CADD 可能使用异双金属 Fe/Mn 中心。Fe/Mn 辅因子的结构以及保守的 HDO 支架如何介导金属选择性仍然是一个谜。采用金属化方法,CADD 在apo、Fe、Mn 和催化活性的 Fe/Mn 形式下得到解决,以确定 Mn 结合的可能位点。对 CADD 活性位点变体的分析进一步强调了次级配位球对辅因子偏好的重要性,以实现有效的 pABA 形成。快速动力学光学和电子顺磁共振(EPR)研究表明,异双金属辅因子选择性地与二氧化物反应,并可能通过形成瞬态酪氨酸自由基中间体和相应的异双金属 Mn/Fe 簇来启动 pABA 组装。

相似文献

1
Assembly of a Heterobimetallic Fe/Mn Cofactor in the -Aminobenzoate Synthase Chlamydia Protein Associating with Death Domains (CADD) Initiates Long-Range Radical Hole-Hopping.在与死亡结构域(CADD)相关的衣原体蛋白 - 氨基苯甲酸合酶中组装异双金属 Fe/Mn 辅因子,引发长程自由基空穴跳跃。
Biochemistry. 2024 Nov 19;63(22):3020-3029. doi: 10.1021/acs.biochem.4c00326. Epub 2024 Oct 29.
2
Self-sacrificial tyrosine cleavage by an Fe:Mn oxygenase for the biosynthesis of -aminobenzoate in .通过 Fe:Mn 加氧酶的自我牺牲型酪氨酸裂解作用合成 - 氨基苯甲酸酯。
Proc Natl Acad Sci U S A. 2022 Sep 27;119(39):e2210908119. doi: 10.1073/pnas.2210908119. Epub 2022 Sep 19.
3
Biochemical characterization of the self-sacrificing p-aminobenzoate synthase from Nitrosomonas europaea reveals key residues involved in selecting a Fe/Fe or Mn/Fe cofactor.欧洲亚硝化单胞菌中自我牺牲型对氨基苯甲酸合酶的生化特性揭示了参与选择铁/铁或锰/铁辅因子的关键残基。
J Biol Inorg Chem. 2025 Apr;30(3):271-281. doi: 10.1007/s00775-025-02109-w. Epub 2025 Mar 13.
4
Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.杂双金属 Mn/Fe 辅因子的化学灵活性:R2lox 和 R2c 蛋白。
J Biol Chem. 2019 Nov 29;294(48):18372-18386. doi: 10.1074/jbc.RA119.010570. Epub 2019 Oct 7.
5
Excision of a Protein-Derived Amine for -Aminobenzoate Assembly by the Self-Sacrificial Heterobimetallic Protein CADD.CADD 自牺牲杂双金属蛋白切除用于 - 氨基苯甲酸酯组装的衍生胺蛋白
Biochemistry. 2023 Nov 21;62(22):3276-3282. doi: 10.1021/acs.biochem.3c00406. Epub 2023 Nov 7.
6
Influence of the second coordination sphere on O activation by a nonheme iron(II) thiolate complex.第二配位层对硫醇盐非血红素铁(II)配合物激活氧的影响。
J Inorg Biochem. 2025 Mar;264:112776. doi: 10.1016/j.jinorgbio.2024.112776. Epub 2024 Nov 17.
7
Heme Oxygenase-Like Metalloenzymes.血红素加氧酶样金属酶
Annu Rev Biochem. 2025 Jun;94(1):59-88. doi: 10.1146/annurev-biochem-030122-043608. Epub 2025 Mar 27.
8
Divergent assembly mechanisms of the manganese/iron cofactors in R2lox and R2c proteins.R2lox和R2c蛋白中锰/铁辅因子的不同组装机制。
J Inorg Biochem. 2016 Sep;162:164-177. doi: 10.1016/j.jinorgbio.2016.04.019. Epub 2016 Apr 16.
9
Molybdenum Cofactor Deficiency钼辅因子缺乏症
10
Reaction Mechanism and Metal Selectivity of Human SAMHD1 Elucidated by QM/MM Calculations.通过量子力学/分子力学计算阐明人类 SAMHD1 的反应机制和金属选择性
ACS Catal. 2025 Jun 1;15(12):10176-10187. doi: 10.1021/acscatal.5c01682. eCollection 2025 Jun 20.

引用本文的文献

1
Biochemical characterization of the self-sacrificing p-aminobenzoate synthase from Nitrosomonas europaea reveals key residues involved in selecting a Fe/Fe or Mn/Fe cofactor.欧洲亚硝化单胞菌中自我牺牲型对氨基苯甲酸合酶的生化特性揭示了参与选择铁/铁或锰/铁辅因子的关键残基。
J Biol Inorg Chem. 2025 Apr;30(3):271-281. doi: 10.1007/s00775-025-02109-w. Epub 2025 Mar 13.

本文引用的文献

1
A single diiron enzyme catalyses the oxidative rearrangement of tryptophan to indole nitrile.一种双铁酶催化色氨酸氧化重排为吲哚腈。
Nat Chem. 2024 Dec;16(12):1989-1998. doi: 10.1038/s41557-024-01603-z. Epub 2024 Sep 16.
2
The structural and functional investigation into an unusual nitrile synthase.对一种不寻常的腈合酶的结构与功能研究。
Nat Commun. 2023 Nov 16;14(1):7425. doi: 10.1038/s41467-023-43285-0.
3
Excision of a Protein-Derived Amine for -Aminobenzoate Assembly by the Self-Sacrificial Heterobimetallic Protein CADD.
CADD 自牺牲杂双金属蛋白切除用于 - 氨基苯甲酸酯组装的衍生胺蛋白
Biochemistry. 2023 Nov 21;62(22):3276-3282. doi: 10.1021/acs.biochem.3c00406. Epub 2023 Nov 7.
4
Enzymatic Hydroxylation of Aliphatic C-H Bonds by a Mn/Fe Cofactor.锰铁辅因子促进的脂肪族 C-H 键的酶促羟化。
J Am Chem Soc. 2023 Aug 2;145(30):16526-16537. doi: 10.1021/jacs.3c03419. Epub 2023 Jul 20.
5
The CCP4 suite: integrative software for macromolecular crystallography.Ccp4 套件:用于大分子晶体学的集成软件。
Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):449-461. doi: 10.1107/S2059798323003595. Epub 2023 May 30.
6
The Chlamydia trachomatis p-aminobenzoate synthase CADD is a manganese-dependent oxygenase that uses its own amino acid residues as substrates.沙眼衣原体对氨基苯甲酸合酶CADD是一种依赖锰的加氧酶,它将自身的氨基酸残基用作底物。
FEBS Lett. 2023 Feb;597(4):557-572. doi: 10.1002/1873-3468.14573. Epub 2023 Jan 20.
7
Self-sacrificial tyrosine cleavage by an Fe:Mn oxygenase for the biosynthesis of -aminobenzoate in .通过 Fe:Mn 加氧酶的自我牺牲型酪氨酸裂解作用合成 - 氨基苯甲酸酯。
Proc Natl Acad Sci U S A. 2022 Sep 27;119(39):e2210908119. doi: 10.1073/pnas.2210908119. Epub 2022 Sep 19.
8
Substrate-Triggered μ-Peroxodiiron(III) Intermediate in the 4-Chloro-l-Lysine-Fragmenting Heme-Oxygenase-like Diiron Oxidase (HDO) BesC: Substrate Dissociation from, and C4 Targeting by, the Intermediate.底物触发的 μ-过氧二铁(III)中间物在 4-氯-L-赖氨酸片段化血红素加氧酶样双铁氧化酶 (HDO) BesC 中:中间物的底物解离和 C4 靶向。
Biochemistry. 2022 Apr 19;61(8):689-702. doi: 10.1021/acs.biochem.1c00774. Epub 2022 Apr 5.
9
BesC Initiates C-C Cleavage through a Substrate-Triggered and Reactive Diferric-Peroxo Intermediate.BesC 通过底物触发的和反应性的双核过氧中间物引发 C-C 键断裂。
J Am Chem Soc. 2021 Dec 22;143(50):21416-21424. doi: 10.1021/jacs.1c11109. Epub 2021 Dec 13.
10
Spontaneous Formation of an Fe/Mn Diamond Core: Models for the Fe/Mn Sites in Class 1c Ribonucleotide Reductases.自发形成的 Fe/Mn 型金刚石核心:1c 类核糖核苷酸还原酶中 Fe/Mn 活性位点的模型。
Inorg Chem. 2021 Jun 21;60(12):8710-8721. doi: 10.1021/acs.inorgchem.1c00684. Epub 2021 Jun 10.