Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany.
Institut für Experimentalphysik, Freie Universität Berlin, D-14195 Berlin, Germany.
J Biol Chem. 2019 Nov 29;294(48):18372-18386. doi: 10.1074/jbc.RA119.010570. Epub 2019 Oct 7.
A heterobimetallic Mn/Fe cofactor is present in the R2 subunit of class Ic ribonucleotide reductases (R2c) and in R2-like ligand-binding oxidases (R2lox). Although the protein-derived metal ligands are the same in both groups of proteins, the connectivity of the two metal ions and the chemistry each cofactor performs are different: in R2c, a one-electron oxidant, the Mn/Fe dimer is linked by two oxygen bridges (μ-oxo/μ-hydroxo), whereas in R2lox, a two-electron oxidant, it is linked by a single oxygen bridge (μ-hydroxo) and a fatty acid ligand. Here, we identified a second coordination sphere residue that directs the divergent reactivity of the protein scaffold. We found that the residue that directly precedes the N-terminal carboxylate metal ligand is conserved as a glycine within the R2lox group but not in R2c. Substitution of the glycine with leucine converted the resting-state R2lox cofactor to an R2c-like cofactor, a μ-oxo/μ-hydroxo-bridged Mn/Fe dimer. This species has recently been observed as an intermediate of the oxygen activation reaction in WT R2lox, indicating that it is physiologically relevant. Cofactor maturation in R2c and R2lox therefore follows the same pathway, with structural and functional divergence of the two cofactor forms following oxygen activation. We also show that the leucine-substituted variant no longer functions as a two-electron oxidant. Our results reveal that the residue preceding the N-terminal metal ligand directs the cofactor's reactivity toward one- or two-electron redox chemistry, presumably by setting the protonation state of the bridging oxygens and thereby perturbing the redox potential of the Mn ion.
一种异双核 Mn/Fe 辅助因子存在于 Ic 类核糖核苷酸还原酶(R2c)的 R2 亚基和类似 R2 的配体结合氧化酶(R2lox)中。尽管这两组蛋白质的蛋白衍生金属配体相同,但两个金属离子的连接方式和每个辅助因子执行的化学性质不同:在 R2c 中,一种单电子氧化剂,Mn/Fe 二聚体由两个氧桥(μ-氧/μ-羟桥)连接,而在 R2lox 中,一种双电子氧化剂,它由一个氧桥(μ-羟桥)和一个脂肪酸配体连接。在这里,我们确定了第二个配位球残基,该残基指导蛋白质支架的不同反应性。我们发现,直接位于 N 端羧酸盐金属配体之前的残基在 R2lox 组中被保守为甘氨酸,但在 R2c 中没有。用亮氨酸替代甘氨酸将静止状态的 R2lox 辅助因子转化为 R2c 样辅助因子,即μ-氧/μ-羟桥连接的 Mn/Fe 二聚体。这种物质最近在 WT R2lox 的氧活化反应中被观察到作为中间产物,表明它在生理上是相关的。因此,R2c 和 R2lox 的辅助因子成熟遵循相同的途径,两种辅助因子形式的结构和功能在氧活化后发生分歧。我们还表明,亮氨酸取代的变体不再作为双电子氧化剂发挥作用。我们的结果表明,位于 N 端金属配体之前的残基将辅助因子的反应性引导到单电子或双电子氧化还原化学,可能是通过设置桥接氧的质子化状态,从而干扰 Mn 离子的氧化还原电位。