• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

杂双金属 Mn/Fe 辅因子的化学灵活性:R2lox 和 R2c 蛋白。

Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.

机构信息

Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany.

Institut für Experimentalphysik, Freie Universität Berlin, D-14195 Berlin, Germany.

出版信息

J Biol Chem. 2019 Nov 29;294(48):18372-18386. doi: 10.1074/jbc.RA119.010570. Epub 2019 Oct 7.

DOI:10.1074/jbc.RA119.010570
PMID:31591267
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6885639/
Abstract

A heterobimetallic Mn/Fe cofactor is present in the R2 subunit of class Ic ribonucleotide reductases (R2c) and in R2-like ligand-binding oxidases (R2lox). Although the protein-derived metal ligands are the same in both groups of proteins, the connectivity of the two metal ions and the chemistry each cofactor performs are different: in R2c, a one-electron oxidant, the Mn/Fe dimer is linked by two oxygen bridges (μ-oxo/μ-hydroxo), whereas in R2lox, a two-electron oxidant, it is linked by a single oxygen bridge (μ-hydroxo) and a fatty acid ligand. Here, we identified a second coordination sphere residue that directs the divergent reactivity of the protein scaffold. We found that the residue that directly precedes the N-terminal carboxylate metal ligand is conserved as a glycine within the R2lox group but not in R2c. Substitution of the glycine with leucine converted the resting-state R2lox cofactor to an R2c-like cofactor, a μ-oxo/μ-hydroxo-bridged Mn/Fe dimer. This species has recently been observed as an intermediate of the oxygen activation reaction in WT R2lox, indicating that it is physiologically relevant. Cofactor maturation in R2c and R2lox therefore follows the same pathway, with structural and functional divergence of the two cofactor forms following oxygen activation. We also show that the leucine-substituted variant no longer functions as a two-electron oxidant. Our results reveal that the residue preceding the N-terminal metal ligand directs the cofactor's reactivity toward one- or two-electron redox chemistry, presumably by setting the protonation state of the bridging oxygens and thereby perturbing the redox potential of the Mn ion.

摘要

一种异双核 Mn/Fe 辅助因子存在于 Ic 类核糖核苷酸还原酶(R2c)的 R2 亚基和类似 R2 的配体结合氧化酶(R2lox)中。尽管这两组蛋白质的蛋白衍生金属配体相同,但两个金属离子的连接方式和每个辅助因子执行的化学性质不同:在 R2c 中,一种单电子氧化剂,Mn/Fe 二聚体由两个氧桥(μ-氧/μ-羟桥)连接,而在 R2lox 中,一种双电子氧化剂,它由一个氧桥(μ-羟桥)和一个脂肪酸配体连接。在这里,我们确定了第二个配位球残基,该残基指导蛋白质支架的不同反应性。我们发现,直接位于 N 端羧酸盐金属配体之前的残基在 R2lox 组中被保守为甘氨酸,但在 R2c 中没有。用亮氨酸替代甘氨酸将静止状态的 R2lox 辅助因子转化为 R2c 样辅助因子,即μ-氧/μ-羟桥连接的 Mn/Fe 二聚体。这种物质最近在 WT R2lox 的氧活化反应中被观察到作为中间产物,表明它在生理上是相关的。因此,R2c 和 R2lox 的辅助因子成熟遵循相同的途径,两种辅助因子形式的结构和功能在氧活化后发生分歧。我们还表明,亮氨酸取代的变体不再作为双电子氧化剂发挥作用。我们的结果表明,位于 N 端金属配体之前的残基将辅助因子的反应性引导到单电子或双电子氧化还原化学,可能是通过设置桥接氧的质子化状态,从而干扰 Mn 离子的氧化还原电位。

相似文献

1
Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.杂双金属 Mn/Fe 辅因子的化学灵活性:R2lox 和 R2c 蛋白。
J Biol Chem. 2019 Nov 29;294(48):18372-18386. doi: 10.1074/jbc.RA119.010570. Epub 2019 Oct 7.
2
Divergent assembly mechanisms of the manganese/iron cofactors in R2lox and R2c proteins.R2lox和R2c蛋白中锰/铁辅因子的不同组装机制。
J Inorg Biochem. 2016 Sep;162:164-177. doi: 10.1016/j.jinorgbio.2016.04.019. Epub 2016 Apr 16.
3
Electronic structural flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.异双核锰/铁辅因子的电子结构柔性:R2lox 和 R2c 蛋白。
J Am Chem Soc. 2014 Sep 24;136(38):13399-409. doi: 10.1021/ja507435t. Epub 2014 Sep 15.
4
Pulsed Multifrequency Electron Paramagnetic Resonance Spectroscopy Reveals Key Branch Points for One- vs Two-Electron Reactivity in Mn/Fe Proteins.脉冲多频电子顺磁共振波谱揭示 Mn/Fe 蛋白中单电子与双电子反应的关键分支点。
J Am Chem Soc. 2022 Jul 13;144(27):11991-12006. doi: 10.1021/jacs.1c13738. Epub 2022 Jul 5.
5
Time-Resolved Investigations of Heterobimetallic Cofactor Assembly in R2lox Reveal Distinct Mn/Fe Intermediates.R2lox中异双金属辅因子组装的时间分辨研究揭示了不同的锰/铁中间体。
Biochemistry. 2017 Jul 5;56(26):3369-3379. doi: 10.1021/acs.biochem.7b00403. Epub 2017 Jun 16.
6
Direct observation of structurally encoded metal discrimination and ether bond formation in a heterodinuclear metalloprotein.在杂双核金属蛋白中直接观察结构编码的金属选择性和醚键形成。
Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17189-94. doi: 10.1073/pnas.1304368110. Epub 2013 Oct 7.
7
Fate of oxygen species from O activation at dimetal cofactors in an oxidase enzyme revealed by Fe nuclear resonance X-ray scattering and quantum chemistry.通过铁核共振 X 射线散射和量子化学揭示氧化酶中二价金属辅因子中 O 激活的氧物种命运。
Biochim Biophys Acta Bioenerg. 2019 Dec 1;1860(12):148060. doi: 10.1016/j.bbabio.2019.148060. Epub 2019 Aug 5.
8
Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein.关键结构基序平衡异双核 Mn/Fe 蛋白中的金属结合和氧化反应性。
J Am Chem Soc. 2020 Mar 18;142(11):5338-5354. doi: 10.1021/jacs.0c00333. Epub 2020 Mar 9.
9
The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.炭疽芽孢杆菌I b类核糖核苷酸还原酶亚基NrdF本质上优先选择锰而非铁。
J Biol Inorg Chem. 2020 Jun;25(4):571-582. doi: 10.1007/s00775-020-01782-3. Epub 2020 Apr 15.
10
Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.异双核锰/铁辅因子氧活化的结构基础。
J Biol Chem. 2015 Oct 16;290(42):25254-72. doi: 10.1074/jbc.M115.675223. Epub 2015 Aug 31.

引用本文的文献

1
Selective isotope labeling probes the chemical capacity and reaction mechanism of a heterobimetallic Mn/Fe protein.选择性同位素标记探究了一种异双金属锰/铁蛋白的化学活性和反应机制。
J Inorg Biochem. 2025 Sep;270:112933. doi: 10.1016/j.jinorgbio.2025.112933. Epub 2025 Apr 23.
2
Structural Elucidation of the Reduced Mn(III)/Fe(III) Intermediate of the Radical-Initiating Metallocofactor in Ribonucleotide Reductase.核糖核苷酸还原酶中自由基引发金属辅因子的还原态Mn(III)/Fe(III)中间体的结构解析
Biochemistry. 2025 Mar 4;64(5):1157-1167. doi: 10.1021/acs.biochem.4c00692. Epub 2025 Feb 17.
3
Recent advances and future challenges in predictive modeling of metalloproteins by artificial intelligence.人工智能在金属蛋白预测建模方面的最新进展与未来挑战
Mol Cells. 2025 Apr;48(4):100191. doi: 10.1016/j.mocell.2025.100191. Epub 2025 Feb 10.
4
Assembly of a Heterobimetallic Fe/Mn Cofactor in the -Aminobenzoate Synthase Chlamydia Protein Associating with Death Domains (CADD) Initiates Long-Range Radical Hole-Hopping.在与死亡结构域(CADD)相关的衣原体蛋白 - 氨基苯甲酸合酶中组装异双金属 Fe/Mn 辅因子,引发长程自由基空穴跳跃。
Biochemistry. 2024 Nov 19;63(22):3020-3029. doi: 10.1021/acs.biochem.4c00326. Epub 2024 Oct 29.
5
A novel alkane monooxygenase evolved from a broken piece of ribonucleotide reductase in Geobacillus kaustophilus HTA426 isolated from Mariana Trench.一种新型烷烃单加氧酶是从马里亚纳海沟分离的 Geobacillus kaustophilus HTA426 中破碎的核糖核苷酸还原酶进化而来的。
Extremophiles. 2024 Feb 14;28(1):18. doi: 10.1007/s00792-024-01332-8.
6
Synthesis and Antioxidant Studies of 2,4-Dioxothiazolidine-5-acetic Acid Based Organic Salts: SC-XRD and DFT Approach.基于2,4-二氧代噻唑烷-5-乙酸的有机盐的合成与抗氧化研究:单晶X射线衍射和密度泛函理论方法
ACS Omega. 2023 Aug 7;8(33):30186-30198. doi: 10.1021/acsomega.3c02895. eCollection 2023 Aug 22.
7
Pulsed Multifrequency Electron Paramagnetic Resonance Spectroscopy Reveals Key Branch Points for One- vs Two-Electron Reactivity in Mn/Fe Proteins.脉冲多频电子顺磁共振波谱揭示 Mn/Fe 蛋白中单电子与双电子反应的关键分支点。
J Am Chem Soc. 2022 Jul 13;144(27):11991-12006. doi: 10.1021/jacs.1c13738. Epub 2022 Jul 5.
8
Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase.比较结构分析为 R2 样配体结合氧化酶的功能提供了新的见解。
FEBS Lett. 2022 Jun;596(12):1600-1610. doi: 10.1002/1873-3468.14319. Epub 2022 Mar 4.
9
The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.炭疽芽孢杆菌I b类核糖核苷酸还原酶亚基NrdF本质上优先选择锰而非铁。
J Biol Inorg Chem. 2020 Jun;25(4):571-582. doi: 10.1007/s00775-020-01782-3. Epub 2020 Apr 15.
10
Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein.关键结构基序平衡异双核 Mn/Fe 蛋白中的金属结合和氧化反应性。
J Am Chem Soc. 2020 Mar 18;142(11):5338-5354. doi: 10.1021/jacs.0c00333. Epub 2020 Mar 9.

本文引用的文献

1
Location-specific quantification of protein-bound metal ions by X-ray anomalous dispersion: Q-XAD.利用 X 射线反常散射对特定位置的蛋白质结合金属离子进行定量分析:Q-XAD。
Acta Crystallogr D Struct Biol. 2019 Aug 1;75(Pt 8):764-771. doi: 10.1107/S2059798319009926. Epub 2019 Jul 31.
2
Assembly of a heterodinuclear Mn/Fe cofactor is coupled to tyrosine-valine ether cross-link formation in the R2-like ligand-binding oxidase.在 R2 样配体结合氧化酶中,异双核 Mn/Fe 辅助因子的组装与酪氨酸-缬氨酸醚交联形成相偶联。
J Biol Inorg Chem. 2019 Mar;24(2):211-221. doi: 10.1007/s00775-019-01639-4. Epub 2019 Jan 28.
3
Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens.Mycoplasma 病原体中多巴自由基驱动的无金属核苷酸还原。
Nature. 2018 Nov;563(7731):416-420. doi: 10.1038/s41586-018-0653-6. Epub 2018 Oct 31.
4
Metal-free class Ie ribonucleotide reductase from pathogens initiates catalysis with a tyrosine-derived dihydroxyphenylalanine radical.无金属的 Ie 类核糖核苷酸还原酶从病原体开始催化作用与酪氨酸衍生的二羟基苯丙氨酸自由基。
Proc Natl Acad Sci U S A. 2018 Oct 2;115(40):10022-10027. doi: 10.1073/pnas.1811993115. Epub 2018 Sep 17.
5
Ether cross-link formation in the R2-like ligand-binding oxidase.R2 样配体结合氧化酶中的醚交联形成。
J Biol Inorg Chem. 2018 Aug;23(6):879-886. doi: 10.1007/s00775-018-1583-3. Epub 2018 Jun 26.
6
Structural Basis for Superoxide Activation of Flavobacterium johnsoniae Class I Ribonucleotide Reductase and for Radical Initiation by Its Dimanganese Cofactor.约翰逊黄杆菌I类核糖核苷酸还原酶超氧化物激活及其二锰辅因子引发自由基的结构基础。
Biochemistry. 2018 May 8;57(18):2679-2693. doi: 10.1021/acs.biochem.8b00247. Epub 2018 Apr 17.
7
Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit.新型 ATP-视锥驱动的核苷酸还原酶通过产生自由基亚基的变构调节。
Elife. 2018 Feb 1;7:e31529. doi: 10.7554/eLife.31529.
8
Time-Resolved Investigations of Heterobimetallic Cofactor Assembly in R2lox Reveal Distinct Mn/Fe Intermediates.R2lox中异双金属辅因子组装的时间分辨研究揭示了不同的锰/铁中间体。
Biochemistry. 2017 Jul 5;56(26):3369-3379. doi: 10.1021/acs.biochem.7b00403. Epub 2017 Jun 16.
9
Evidence for a Di-μ-oxo Diamond Core in the Mn(IV)/Fe(IV) Activation Intermediate of Ribonucleotide Reductase from Chlamydia trachomatis.沙眼衣原体核糖核苷酸还原酶中 Mn(IV)/Fe(IV) 激活中间产物中二聚 μ-氧代二核结构的证据。
J Am Chem Soc. 2017 Feb 8;139(5):1950-1957. doi: 10.1021/jacs.6b11563. Epub 2017 Jan 27.
10
Protonation State of MnFe and FeFe Cofactors in a Ligand-Binding Oxidase Revealed by X-ray Absorption, Emission, and Vibrational Spectroscopy and QM/MM Calculations.通过X射线吸收、发射和振动光谱以及量子力学/分子力学计算揭示的配体结合氧化酶中MnFe和FeFe辅因子的质子化状态
Inorg Chem. 2016 Oct 3;55(19):9869-9885. doi: 10.1021/acs.inorgchem.6b01752. Epub 2016 Sep 9.