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可编程剪接的策略。

Strategies for programmable manipulation of alternative splicing.

机构信息

Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA; Sanford Stem Cell Institute Innovation Center and Stem Cell Program, University of California San Diego, La Jolla, CA, USA; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.

Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA; Sanford Stem Cell Institute Innovation Center and Stem Cell Program, University of California San Diego, La Jolla, CA, USA; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA; UCSD Center for RNA Technologies and Therapeutics, University of California San Diego, La Jolla, CA, USA.

出版信息

Curr Opin Genet Dev. 2024 Dec;89:102272. doi: 10.1016/j.gde.2024.102272. Epub 2024 Oct 29.

DOI:10.1016/j.gde.2024.102272
PMID:39471777
Abstract

Alternative splicing (AS) plays a pivotal role in protein diversity and mRNA maturation. Programmable control of targeted AS events is of longstanding interest in RNA biology, promising correction of dysregulated splicing in disease and discovery of AS events. This review explores four main strategies for programmable splicing manipulation: (1) inhibiting splicing signals with antisense oligonucleotides (ASOs), exemplified by therapies approved by the U.S. Food and Drug Administration, (2) applying DNA-targeting clustered regularly interspaced short palindromic repeats systems to edit splicing signals, (3) using synthetic splicing factors, including synthetic proteins and ribonucleoproteins, inspired by natural RNA-binding proteins, and (4) guiding endogenous splicing machinery with bifunctional ASOs and engineered small nuclear RNAs. While ASOs remain clinically prominent, emerging technologies aim for broad, scalable, durable, and precise splicing modulation, holding promise for transformative advancements in RNA biology and therapeutic interventions.

摘要

选择性剪接 (AS) 在蛋白质多样性和 mRNA 成熟中发挥着关键作用。靶向 AS 事件的可编程控制一直是 RNA 生物学的研究热点,有望纠正疾病中失调的剪接,并发现新的 AS 事件。本综述探讨了可编程剪接操纵的四种主要策略:(1)利用反义寡核苷酸 (ASO) 抑制剪接信号,美国食品和药物管理局批准的疗法就是这方面的例子;(2)应用靶向 DNA 的簇状规则间隔短回文重复系统编辑剪接信号;(3)利用合成剪接因子,包括受天然 RNA 结合蛋白启发的合成蛋白和核糖核蛋白;(4)利用双功能 ASO 和工程小核 RNA 引导内源性剪接机制。虽然 ASO 仍然在临床上占据重要地位,但新兴技术旨在实现广泛、可扩展、持久和精确的剪接调控,有望在 RNA 生物学和治疗干预方面取得突破性进展。

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本文引用的文献

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A CRISPR-dCas13 RNA-editing tool to study alternative splicing.一种用于研究可变剪接的 CRISPR-dCas13 RNA 编辑工具。
Nucleic Acids Res. 2024 Oct 28;52(19):11926-11939. doi: 10.1093/nar/gkae682.
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Efficient, specific, and combinatorial control of endogenous exon splicing with dCasRx-RBM25.利用 dCasRx-RBM25 实现内源性外显子剪接的高效、特异和组合调控。
Mol Cell. 2024 Jul 11;84(13):2573-2589.e5. doi: 10.1016/j.molcel.2024.05.028. Epub 2024 Jun 24.
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基于 CRISPR-dCas13d 的近端和远端剪接调控元件的深度筛选。
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Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion.大规模评估 RNA 结合蛋白激活外显子包含的能力。
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Deep learning and CRISPR-Cas13d ortholog discovery for optimized RNA targeting.深度学习和 CRISPR-Cas13d 同源物发现用于优化 RNA 靶向。
Cell Syst. 2023 Dec 20;14(12):1087-1102.e13. doi: 10.1016/j.cels.2023.11.006. Epub 2023 Dec 12.
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Optimization of base editors for the functional correction of SMN2 as a treatment for spinal muscular atrophy.优化碱基编辑器以实现 SMN2 的功能矫正,作为治疗脊髓性肌萎缩症的一种方法。
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Efficient exon skipping by base-editor-mediated abrogation of exonic splicing enhancers.碱基编辑器介导的外显子剪接增强子失活可实现高效外显子跳跃。
Cell Rep. 2023 Nov 28;42(11):113340. doi: 10.1016/j.celrep.2023.113340. Epub 2023 Oct 30.
8
A strategy for Cas13 miniaturization based on the structure and AlphaFold.基于结构和 AlphaFold 的 Cas13 小型化策略
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9
Challenges and future perspective of antisense therapy for spinal muscular atrophy: A review.反义疗法治疗脊髓性肌萎缩症的挑战与展望:综述。
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Base editing rescue of spinal muscular atrophy in cells and in mice.碱基编辑技术挽救细胞和小鼠中的脊髓性肌肉萎缩症。
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