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植物-微生物组研究中合成群落的社区标准和未来机遇。

Community standards and future opportunities for synthetic communities in plant-microbiota research.

机构信息

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

DOE Joint Genome Institute, Berkeley, CA, USA.

出版信息

Nat Microbiol. 2024 Nov;9(11):2774-2784. doi: 10.1038/s41564-024-01833-4. Epub 2024 Oct 30.

Abstract

Harnessing beneficial microorganisms is seen as a promising approach to enhance sustainable agriculture production. Synthetic communities (SynComs) are increasingly being used to study relevant microbial activities and interactions with the plant host. Yet, the lack of community standards limits the efficiency and progress in this important area of research. To address this gap, we recommend three actions: (1) defining reference SynComs; (2) establishing community standards, protocols and benchmark data for constructing and using SynComs; and (3) creating an infrastructure for sharing strains and data. We also outline opportunities to develop SynCom research through technical advances, linking to field studies, and filling taxonomic blind spots to move towards fully representative SynComs.

摘要

利用有益微生物被视为提高可持续农业生产的一种有前途的方法。合成群落(SynComs)越来越多地被用于研究相关的微生物活动和与植物宿主的相互作用。然而,群落标准的缺乏限制了该重要研究领域的效率和进展。为了解决这一差距,我们建议采取以下三项行动:(1)定义参考 SynComs;(2)建立构建和使用 SynComs 的社区标准、协议和基准数据;(3)创建一个共享菌株和数据的基础设施。我们还概述了通过技术进步、与田间研究联系以及填补分类学盲点来开发 SynCom 研究的机会,以实现完全有代表性的 SynComs。

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