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分子动力学模拟中混合的显式构型熵

Explicit Configurational Entropy of Mixing in Molecular Dynamics Simulations.

作者信息

Hanke T, Upterworth A L, Sebastiani D

机构信息

Department of Chemistry, Martin Luther University, 06120 Halle, Germany.

出版信息

J Phys Chem Lett. 2024 Nov 14;15(45):11320-11327. doi: 10.1021/acs.jpclett.4c02819. Epub 2024 Nov 5.

Abstract

The entropy of mixing of a multicomponent system of particles is a simple expression of the molar fractions for the equilibrium state, but its intermediate values for transient (nonequilibrium) states can not be calculated directly from the particle coordinates so far. We propose a simple expression for the configurational entropy of mixing based solely on the set of instantaneous coordinates, which is suitable for the on-the-fly determination of the degree of mixing along a molecular dynamics trajectory. We illustrate the applicability of our scheme with the example of several molecular mixtures that exhibit fast and slow mixing and demixing processes within a molecular dynamics simulation.

摘要

多组分粒子系统的混合熵是平衡态摩尔分数的简单表达式,但到目前为止,其瞬态(非平衡)态的中间值无法直接从粒子坐标计算得出。我们提出了一个仅基于瞬时坐标集的混合构型熵的简单表达式,它适用于沿分子动力学轨迹实时确定混合程度。我们通过几个分子混合物的例子来说明我们方案的适用性,这些混合物在分子动力学模拟中表现出快速和缓慢的混合与解混合过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c8/11571226/9540ec2eb5b5/jz4c02819_0001.jpg

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