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沿着协变量对非平衡稳态动力学进行重新加权。

Reweighting non-equilibrium steady-state dynamics along collective variables.

机构信息

Max Planck Institute for Polymer Research, 55128 Mainz, Germany.

出版信息

J Chem Phys. 2021 Apr 7;154(13):134105. doi: 10.1063/5.0042972.

Abstract

Computer simulations generate microscopic trajectories of complex systems at a single thermodynamic state point. We recently introduced a Maximum Caliber (MaxCal) approach for dynamical reweighting. Our approach mapped these trajectories to a Markovian description on the configurational coordinates and reweighted path probabilities as a function of external forces. Trajectory probabilities can be dynamically reweighted both from and to equilibrium or non-equilibrium steady states. As the system's dimensionality increases, an exhaustive description of the microtrajectories becomes prohibitive-even with a Markovian assumption. Instead, we reduce the dimensionality of the configurational space to collective variables (CVs). Going from configurational to CV space, we define local entropy productions derived from configurationally averaged mean forces. The entropy production is shown to be a suitable constraint on MaxCal for non-equilibrium steady states expressed as a function of CVs. We test the reweighting procedure on two systems: a particle subject to a two-dimensional potential and a coarse-grained peptide. Our CV-based MaxCal approach expands dynamical reweighting to larger systems, for both static and dynamical properties, and across a large range of driving forces.

摘要

计算机模拟在单个热力学状态点生成复杂系统的微观轨迹。我们最近引入了一种最大口径(MaxCal)方法来进行动力学重加权。我们的方法将这些轨迹映射到构象坐标上的马尔可夫描述,并根据外部力对路径概率进行重新加权。轨迹概率可以从平衡态或非平衡稳态动态重新加权到平衡态或非平衡稳态。随着系统维数的增加,对微观轨迹进行详尽描述变得不可行——即使采用马尔可夫假设也是如此。相反,我们将构象空间的维数降低到了集体变量(CVs)。从构象空间到 CV 空间,我们定义了从构象平均平均力导出的局部熵产生。熵产生被证明是一个合适的约束条件,用于将非平衡稳态表示为 CV 的函数的 MaxCal。我们在两个系统上测试了重加权过程:一个受到二维势的粒子和一个粗粒化的肽。我们基于 CV 的 MaxCal 方法将动力学重加权扩展到更大的系统,包括静态和动态特性,以及在很大的驱动力范围内。

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