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Lasy-Seq:一种高通量 3' RNA-Seq 方法,用于大规模水稻转录组分析。

Lasy-Seq: A High-Throughput 3' RNA-Seq Method for Large-Scale Transcriptome Profiling in Rice.

机构信息

Faculty of Agriculture, Ryukoku University, Shiga, Japan.

Institute for Advanced Biosciences, Keio University, Yamagata, Japan.

出版信息

Methods Mol Biol. 2025;2869:123-134. doi: 10.1007/978-1-0716-4204-7_13.

DOI:10.1007/978-1-0716-4204-7_13
PMID:39499473
Abstract

Lasy-Seq (low-cost and easy RNA-seq) is a high-throughput library preparation method for 3' RNA-seq. Usage of oligo(dT) primers with unique index sequences allows simultaneous reverse transcription (RT) reaction and sample indexing. Therefore, each post-RT step, which was performed on a sample-by-sample basis in a conventional method, can be performed on a large number of samples together in a single tube. With the Lasy-Seq, the sequencing-ready library pool can be prepared from a few to several hundred samples in a few days.

摘要

Lasy-Seq(低成本、易操作的 RNA-seq 方法)是一种高通量的 3' RNA-seq 文库制备方法。使用带有独特索引序列的寡聚(dT)引物可以同时进行逆转录(RT)反应和样本标记。因此,在传统方法中每个样本单独进行的 RT 后步骤,现在可以在一个管中同时对大量样本进行。使用 Lasy-Seq,可在数天内从几个到几百个样本中制备测序就绪的文库池。

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本文引用的文献

1
Fillable and unfillable gaps in plant transcriptome under field and controlled environments.植物转录组在田间和控制环境下的可填充和不可填充间隙。
Plant Cell Environ. 2022 Aug;45(8):2410-2427. doi: 10.1111/pce.14367. Epub 2022 Jun 21.
2
Genomic Basis of Transcriptome Dynamics in Rice under Field Conditions.田间条件下水稻转录组动态的基因组基础。
Plant Cell Physiol. 2021 Nov 17;62(9):1436-1445. doi: 10.1093/pcp/pcab088.