CBSA UR 4312, University of Rouen Normandy, 76821, Rouen, Mont Saint Aignan, France.
Theory Biosci. 2024 Nov;143(4):253-277. doi: 10.1007/s12064-024-00427-2. Epub 2024 Nov 6.
A fundamental problem in biology is how cells obtain the reproducible, coherent phenotypes needed for natural selection to act or, put differently, how cells manage to limit their exploration of the vastness of phenotype space. A subset of this problem is how they regulate their cell cycle. Bacteria, like eukaryotic cells, are highly structured and contain scores of hyperstructures or assemblies of molecules and macromolecules. The existence and functioning of certain of these hyperstructures depend on phase transitions. Here, I propose a conceptual framework to facilitate the development of water-clock hypotheses in which cells use water to generate phenotypes by living 'on the edge of phase transitions'. I give an example of such a hypothesis in the case of the bacterial cell cycle and show how it offers a relatively novel 'view from here' that brings together a range of different findings about hyperstructures, phase transitions and water and that can be integrated with other hypotheses about differentiation, metabolism and the origins of life.
生物学中的一个基本问题是细胞如何获得可复制的、协调一致的表型,以使自然选择发挥作用;换句话说,细胞如何设法限制其对表型空间广阔性的探索。这个问题的一个子集是它们如何调节细胞周期。细菌与真核细胞一样,具有高度的结构,包含数十种超结构或分子和大分子的组装。某些超结构的存在和功能依赖于相变。在这里,我提出了一个概念框架,以促进水钟假说的发展,其中细胞通过“处于相变边缘”来利用水产生表型。我以细菌细胞周期为例展示了这样一个假说,它提供了一个相对新颖的“从这里看”的视角,将关于超结构、相变和水的一系列不同发现结合起来,并可以与其他关于分化、代谢和生命起源的假说相整合。