Time course transcriptomic profiling suggests Crp/Fnr transcriptional regulation of gene in a NO-reducing thermophile.

HRV44 is a thermophilic chemolithoautotroph possessing clade II type nitrous oxide (NO) reductase (NosZ) that has an outstanding activity in reducing NO to dinitrogen gas. Here, we attempt to understand molecular responses of HRV44 to NO. Time course transcriptome and proteomic mass spectrometry analyses under anaerobic conditions revealed that most of transcripts and peptides related to denitrification were constitutively detected, even in the absence of any nitrogen oxides as electron acceptors. Gene expressions involved in electron transport to NosZ were upregulated within 3 h in response to NO, rather than upregulation of genes. Two genes encoding Crp/Fnr transcriptional regulators observed upstream of and gene clusters had significant negative correlations with expression. Statistical path analysis further inferred a significant causal relationship between the gene expression of and that of one Crp/Fnr regulators. Our findings contribute to understanding the transcriptional regulation in clade II type NO-reducers.