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通过费曼一致性和插值最近质心技术增强基因组紊乱预测。

Enhancing genomic disorder prediction through Feynman Concordance and Interpolated Nearest Centroid techniques.

机构信息

Department of AI, ASET, Amity University, Noida, UP, India.

Department of CSE, Amity University, Mumbai, India.

出版信息

Sci Rep. 2024 Nov 12;14(1):27653. doi: 10.1038/s41598-024-72923-w.

DOI:10.1038/s41598-024-72923-w
PMID:39532919
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11557834/
Abstract

Clinical biomedical applications of genomic technologies are extensive and provide possibilities to enhance healthcare covering the span of medical talents. Genome disorder prediction is an important issue in biomedical research. Genome disorders cause multivariate diseases such as cancer, dementia, diabetes, Leigh syndrome, etc. Existing machine and deep learning-based methods were introduced to forecast genome disorders. However, the genome prediction outcomes were not sufficient. To address this issue, propose a new method called Quadratic Feynman Polynomial Interpolated and Vector Nearest Centroid-based (QFPI-VNC) for acutely predicting the genome disorder with improved sensitivity and specificity. First, we utilized medical data about children from a public genomes dataset and applied it to Linear Quadratic and Feynman Kac Genome filtering to obtain computationally efficient filtered results. Next, the results are fed to the Concordance Correlated Polynomial Interpolation with the purpose of extracting genome wide data in an accurate manner. Finally, the features extracted are fused and fed to the Support Vector and Nearest Centroid model for genome disorder prediction. Experimental investigations of the proposed method employing the genome dataset confirm that the performance of the proposed method is prospective and in the scope of acceptance with relative to state-of-the-art methods in terms of convergence speed, recognition rate, sensitivity, and specificity. Results suggest that the QFPI-VNC method produces the best performance with a higher genome disease detection rate by 14%, accuracy by 11%, sensitivity by 14% specificity by 12%, and lesser convergence speed by 29% than compared to state-of-the-art methods.

摘要

基因组技术在临床医学中的应用非常广泛,为医疗保健提供了跨越医学人才的可能性。基因组紊乱预测是生物医学研究中的一个重要问题。基因组紊乱会导致多种疾病,如癌症、痴呆、糖尿病、Leigh 综合征等。已经引入了基于机器和深度学习的方法来预测基因组紊乱。然而,基因组预测的结果并不充分。为了解决这个问题,我们提出了一种新的方法,称为二次费曼多项式插值和基于向量最近质心的方法(QFPI-VNC),用于急性预测基因组紊乱,提高了敏感性和特异性。首先,我们利用公共基因组数据集中关于儿童的医学数据,并将其应用于线性二次和费曼 Kac 基因组过滤,以获得计算效率高的过滤结果。接下来,将结果输入到协调相关多项式插值中,以准确地提取基因组范围内的数据。最后,将提取的特征融合并输入到支持向量和最近质心模型中,以进行基因组紊乱预测。使用基因组数据集对所提出方法的实验研究表明,与最先进的方法相比,所提出方法在收敛速度、识别率、敏感性和特异性方面具有前瞻性和可接受的性能。结果表明,与最先进的方法相比,QFPI-VNC 方法的性能最好,基因组疾病检测率提高了 14%,准确性提高了 11%,敏感性提高了 14%,特异性提高了 12%,收敛速度降低了 29%。

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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/52de/11557834/ebc1f506f6be/41598_2024_72923_Fig4_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/52de/11557834/3728d5625ae8/41598_2024_72923_Fig8_HTML.jpg
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