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通过SAAL1相互作用对真核起始因子3M在肺腺癌中的致癌潜力进行综合分析。

Comprehensive analysis of the oncogenic potential of eukaryotic initiation factor 3M via SAAL1 interaction in lung adenocarcinoma.

作者信息

Chiang Hung-Hsing, Wu Kuan-Li, Tsai Hung-Pei, Ong Chai-Tung, Chang Chao-Yuan, Wu Yu-Yuan, Shen Tzu-Yen, Hung Jen-Yu, Lee Hsiao-Chen, Hsu Ya-Ling, Tsai Ying-Ming

机构信息

Division of Thoracic Surgery, Department of Surgery, Kaohsiung Medical University Hospital, Kaohsiung Medical University Kaohsiung 807, Taiwan.

Kaohsiung Medical University Ph.D. Program in Environmental and Occupational Medicine Kaohsiung 807, Taiwan.

出版信息

Am J Cancer Res. 2024 Oct 15;14(10):4817-4829. doi: 10.62347/JKTJ7904. eCollection 2024.

DOI:10.62347/JKTJ7904
PMID:39553230
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11560815/
Abstract

Lung adenocarcinoma (LUAD) carries a poor prognosis at advanced stages underscoring the need to elucidate the underlying molecular mechanisms driving its pathogenesis. This study aimed to investigate the roles of eukaryotic translation initiation factor 3 subunit M () and its associated effector, serum amyloid A-like 1 (), in LUAD development and progression. Bioinformatic analyses such as TNMplot, The Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO), and other public databases were used to evaluate and expression levels, methylation status, clinical associations, and potential transcriptional regulators across LUAD datasets. Patient samples were analyzed for / expression by qRT-PCR, immunohistochemistry, and ELISA. and were overexpressed in LUAD tumor tissues compared with normal lung tissues, correlated with advanced stage, nodal metastasis, and poor survival outcomes. High / levels associated with increased cell proliferation, epithelial-mesenchymal transition, metastasis, and regulatory T cell dysfunction based on gene set enrichment analysis (GSEA). Mechanistically, / upregulation was linked to promoter hypomethylation, and transcriptionally regulated by JMJD1C, via hTFtarget prediction. The / promote oncogenic cellular programs and immunosuppressive microenvironments that conferred unfavorable prognosis. These findings nominate EIF3M/SAAL1 as potential therapeutic targets and biomarkers in LUAD.

摘要

肺腺癌(LUAD)在晚期预后较差,这突出表明需要阐明驱动其发病机制的潜在分子机制。本研究旨在探讨真核翻译起始因子3亚基M()及其相关效应物血清淀粉样蛋白A样1()在LUAD发生发展中的作用。使用TNMplot、癌症基因组图谱(TCGA)、基因表达综合数据库(GEO)等生物信息学分析以及其他公共数据库来评估LUAD数据集中的和表达水平、甲基化状态、临床关联以及潜在的转录调节因子。通过qRT-PCR、免疫组织化学和ELISA分析患者样本中的/表达情况。与正常肺组织相比,LUAD肿瘤组织中的和表达上调,与晚期、淋巴结转移和不良生存结果相关。基于基因集富集分析(GSEA),高/水平与细胞增殖增加、上皮-间质转化、转移和调节性T细胞功能障碍有关。机制上,/上调与启动子低甲基化有关,并通过hTFtarget预测由JMJD1C进行转录调控。/促进致癌细胞程序和免疫抑制微环境,从而导致不良预后。这些发现表明EIF3M/SAAL1是LUAD潜在的治疗靶点和生物标志物。

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本文引用的文献

1
RNA splicing regulator EIF3D regulates the tumor microenvironment through immunogene-related alternative splicing in head and neck squamous cell carcinoma.RNA剪接调节因子EIF3D通过头颈部鳞状细胞癌中免疫基因相关的可变剪接调节肿瘤微环境。
Aging (Albany NY). 2024 Mar 25;16(7):5929-5948. doi: 10.18632/aging.205681.
2
Targeting JMJD1C to selectively disrupt tumor T cell fitness enhances antitumor immunity.靶向 JMJD1C 以选择性破坏肿瘤 T 细胞适应性可增强抗肿瘤免疫。
Nat Immunol. 2024 Mar;25(3):525-536. doi: 10.1038/s41590-024-01746-8. Epub 2024 Feb 14.
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Lung cancer statistics, 2023.2023 年肺癌统计数据。
Cancer. 2024 Apr 15;130(8):1330-1348. doi: 10.1002/cncr.35128. Epub 2024 Jan 27.
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Transcriptome-level discovery of survival-associated biomarkers and therapy targets in non-small-cell lung cancer.非小细胞肺癌中与生存相关的生物标志物和治疗靶点的转录组水平发现。
Br J Pharmacol. 2024 Feb;181(3):362-374. doi: 10.1111/bph.16257. Epub 2023 Nov 23.
5
GSCA: an integrated platform for gene set cancer analysis at genomic, pharmacogenomic and immunogenomic levels.GSCA:一个用于在基因组、药物基因组学和免疫基因组学水平进行基因集癌症分析的综合平台。
Brief Bioinform. 2023 Jan 19;24(1). doi: 10.1093/bib/bbac558.
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Cancer Epigenetics: An Overview.癌症表观遗传学:概述
Arch Med Res. 2022 Dec;53(8):732-740. doi: 10.1016/j.arcmed.2022.11.003. Epub 2022 Nov 18.
7
TISCH2: expanded datasets and new tools for single-cell transcriptome analyses of the tumor microenvironment.TISCH2:用于肿瘤微环境单细胞转录组分析的扩展数据集和新工具。
Nucleic Acids Res. 2023 Jan 6;51(D1):D1425-D1431. doi: 10.1093/nar/gkac959.
8
JMJD family proteins in cancer and inflammation.JMJD 家族蛋白在癌症和炎症中的作用。
Signal Transduct Target Ther. 2022 Sep 1;7(1):304. doi: 10.1038/s41392-022-01145-1.
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Jmjd1c demethylates STAT3 to restrain plasma cell differentiation and rheumatoid arthritis.JMJD1C 通过去甲基化 STAT3 抑制浆细胞分化并缓解类风湿关节炎。
Nat Immunol. 2022 Sep;23(9):1342-1354. doi: 10.1038/s41590-022-01287-y. Epub 2022 Aug 22.
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JMJD1C-regulated lipid synthesis contributes to the maintenance of -rearranged acute myeloid leukemia.JMJD1C调控的脂质合成有助于维持重排型急性髓系白血病。
Leuk Lymphoma. 2022 Sep;63(9):2149-2160. doi: 10.1080/10428194.2022.2068004. Epub 2022 Apr 25.