Xu Bowen, Li Hongye, Chen Hongping, Teng Da, Gong Lei, Zhong Lin, Yang Jun
Qingdao Medical College of Qingdao University, Qingdao, Shandong, 266000, People's Republic of China.
Department of Cardiology, Yantai Yuhuangding Hospital, Yantai, Shandong, 264000, People's Republic of China.
J Inflamm Res. 2024 Nov 13;17:8813-8830. doi: 10.2147/JIR.S488288. eCollection 2024.
Atherosclerosis(AS) is a vascular disease characterized by the development of plaque in the arteries, and atrial fibrillation (AF) is a common heart arrhythmia. These two conditions share several risk factors in common, such as aging, diabetes, obesity, and hypertension. Ferroptosis is a new mode of non-apoptotic cell death that plays a key role in cardiomyocyte death and has been associated with a variety of cardiac diseases. This study aimed to investigate the ferroptosis biomarkers and underlying biological mechanisms associated with AF and AS.
The gene expression dataset was obtained from GEO database, differentially expressed genes (DEGs) and ferroptosis expressed genes (FDGs) were obtained by data processing and screening, and then functional enrichment, network construction, transcription factor prediction, identification of biomarkers by LASSO and SVM - RFE algorithms, and also immune infiltration analyses and cellular experiments were performed.
In AF and AS, 1627 and 571 DEGs were identified respectively, and 128 were intersected, and 47 common FDGs were also identified. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of DEGs revealed that they were associated with biological processes and pathways such as leukocyte immunity, and FDGs were also involved in specific functions and pathways. Fifteen key genes were identified, CSF1R and ITGAM expression differences were verified, and seven transcription factors were predicted to be differentially expressed. Characterized genes were screened to construct models with good diagnostic efficacy, and immune infiltration showed that NUPR1 was associated with altered immune environments, and WB indicated that NUPR1 was highly expressed in the disease model.
Our study demonstrates that the ferroptosis gene NUPR1 plays a role in the pathogenesis of atrial fibrillation and atherosclerosis, and also provides valuable insights into their molecular mechanisms, which may contribute to the development of new targets and strategies for the treatment of these diseases.
动脉粥样硬化(AS)是一种以动脉斑块形成为特征的血管疾病,而心房颤动(AF)是一种常见的心律失常。这两种病症有若干共同的危险因素,如衰老、糖尿病、肥胖和高血压。铁死亡是一种新的非凋亡性细胞死亡模式,在心肌细胞死亡中起关键作用,并与多种心脏疾病相关。本研究旨在探究与心房颤动和动脉粥样硬化相关的铁死亡生物标志物及潜在生物学机制。
从基因表达综合数据库(GEO数据库)获取基因表达数据集,通过数据处理和筛选获得差异表达基因(DEGs)和铁死亡表达基因(FDGs),随后进行功能富集、网络构建、转录因子预测,采用最小绝对收缩和选择算子(LASSO)及支持向量机递归特征消除(SVM - RFE)算法鉴定生物标志物,还进行了免疫浸润分析和细胞实验。
在心房颤动和动脉粥样硬化中,分别鉴定出1627个和571个差异表达基因,其中128个基因相交,还鉴定出47个共同的铁死亡表达基因。对差异表达基因进行基因本体(GO)和京都基因与基因组百科全书(KEGG)分析表明,它们与白细胞免疫等生物过程和途径相关,铁死亡表达基因也参与特定功能和途径。鉴定出15个关键基因,验证了集落刺激因子1受体(CSF1R)和整合素α - M(ITGAM)的表达差异,并预测7个转录因子存在差异表达。筛选特征基因构建具有良好诊断效能的模型,免疫浸润显示核仁素(NUPR1)与免疫环境改变相关,蛋白质免疫印迹(WB)表明NUPR1在疾病模型中高表达。
我们的研究表明,铁死亡基因NUPR1在心房颤动和动脉粥样硬化的发病机制中起作用,也为其分子机制提供了有价值的见解,这可能有助于开发治疗这些疾病的新靶点和新策略。