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高原鼠兔（双翅目：粪蝇科）的线粒体全基因组：基因组描述与系统发育进化

Complete mitochondrial genome of (Diptera: Scathophagidae) in wild plateau pika: genome descriptions and phylogenetic evolution.

作者信息

Zhang Haining, Chen Wangkai, Meng Ru, Duo Hong, Zhang Xueyong, Guo Zhihong, Shen Xiuying, Liu Qing, Li Zhi, Sun Donglei, Fu Yong

机构信息

Academy of Animal Sciences and Veterinary Medicine, Qinghai University, Xining, People's Republic of China.

Qinghai Provincial Key Laboratory of Pathogen Diagnosis for Animal Diseases and Green Technical Research for Prevention and Control, Xining, People's Republic of China.

出版信息

Parasitology. 2024 Sep;151(10):1075-1084. doi: 10.1017/S0031182024000623. Epub 2024 May 22.

DOI:10.1017/S0031182024000623
PMID:39563190
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11894003/
Abstract

As a member of the Scathophagidae family, () is widely distributed globally and is closely associated with animal feces. It is also a species of great interest to many scientific studies. However, its phylogenetic relationships are poorly understood. In this study, was found in plateau pikas for the first time. The potential cause of its presence in the plateau pikas was discussed and it was speculated that the presence of was related to the yak feces. In addition, 2 nuclear genes (18SrDNA and 28SrDNA), 1 mitochondrial gene (COI), and the complete mitochondrial genome of were sequenced. Phylogenetic trees constructed based on 13 Protein coding genes (13PCGs), 18S and 28S rDNA showed that is closely related to the family; phylogenetic results based on COI suggest that within the family Scathophagidae, is more closely related to the genus , , and . Divergence times estimated using the COI gene suggest that the divergence formation of the genus is closely related to changes in biogeographic scenarios and potentially driven by a combination of uplift of the Qinghai-Tibetan Plateau (QTP) and dramatic climate changes. These results provide valuable information for further studies on the phylogeny and differentiation of the genus in the future.

摘要

作为厕蝇科的一员，（）在全球广泛分布，且与动物粪便密切相关。它也是众多科学研究关注的物种。然而，对其系统发育关系了解甚少。在本研究中，首次在高原鼠兔体内发现了（）。探讨了其在高原鼠兔体内存在的潜在原因，并推测其存在与牦牛粪便有关。此外，对（）的2个核基因（18SrDNA和28SrDNA）、1个线粒体基因（COI）以及完整线粒体基因组进行了测序。基于13个蛋白质编码基因（13PCGs）、18S和28S rDNA构建的系统发育树表明，（）与（）科关系密切；基于COI的系统发育结果表明，在厕蝇科内，（）与（）属、（）属、（）属和（）属关系更为密切。利用COI基因估计的分歧时间表明，（）属的分歧形成与生物地理格局变化密切相关，可能是由青藏高原隆升和剧烈气候变化共同驱动的。这些结果为今后进一步研究（）属的系统发育和分化提供了有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/5edcc1dac76f/S0031182024000623_fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/9e041177dca7/S0031182024000623_figAb.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/c2768dac8a3c/S0031182024000623_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/136754be44e4/S0031182024000623_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/9da37faeb280/S0031182024000623_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/a930f173dcb8/S0031182024000623_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/087688f08ec2/S0031182024000623_fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/5edcc1dac76f/S0031182024000623_fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/9e041177dca7/S0031182024000623_figAb.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/c2768dac8a3c/S0031182024000623_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/136754be44e4/S0031182024000623_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/9da37faeb280/S0031182024000623_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/a930f173dcb8/S0031182024000623_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/087688f08ec2/S0031182024000623_fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d16/11894003/5edcc1dac76f/S0031182024000623_fig6.jpg

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