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全基因组鉴定 基因家族和 ClDELLA 蛋白在非生物胁迫下的表达模式分析。

Genome-Wide Identification of Gene Family in and Expression Pattern Analysis of ClDELLA Protein Under Abiotic Stresses.

机构信息

State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing 210037, China.

出版信息

Int J Mol Sci. 2024 Nov 15;25(22):12262. doi: 10.3390/ijms252212262.

Abstract

The Chinese fir ( is a significant species utilized in afforestation efforts in southern China. It is distinguished by its rapid growth and adaptability to diverse environmental conditions. The GRAS gene family comprises a group of plant-specific transcription factors that play a pivotal role in plant growth and development, response to adversity, and hormone regulatory networks. However, the exploration of the GRAS family in gymnosperm Chinese fir has not yet begun. In this study, a total of 43 genes were identified in the whole genome of Chinese fir, and a phylogenetic analysis classified them into nine distinct subfamilies. Gene structure analysis revealed that the majority of genes lacked introns. It is notable that among these proteins, both and possess distinctive DELLA structural domains. Cis-acting element analysis revealed that nearly all genes contained light-responsive elements, while hormone-responsive elements, environmental-responsive elements (low-temperature- or defense-responsive elements), and meristem-organization-related elements were also identified. Based on transcriptome data and RT-qPCR expression patterns, we analyzed the expression of and genes across different developmental stages, hormones, and three abiotic stresses. Subcellular localization analysis demonstrated that and were localized to the nucleus. Transcriptional activation assays showed that both genes have self-activating activity. In conclusion, the results of this study indicate that the gene family is involved in the response of Chinese fir to environmental stress. Further research on the genes provides valuable information for exploring the potential regulatory network of DELLA proteins in Chinese fir.

摘要

杉木( Cunninghamia lanceolata )是中国南方造林中重要的造林树种。它具有生长迅速和适应不同环境条件的特点。GRAS 基因家族是一组植物特异性转录因子,在植物生长发育、逆境响应和激素调控网络中发挥着关键作用。然而,对裸子植物杉木中的 GRAS 家族的研究尚未开始。在本研究中,共从杉木全基因组中鉴定出 43 个基因,并通过系统发育分析将其分为九个不同的亚家族。基因结构分析表明,大多数基因缺乏内含子。值得注意的是,在这些蛋白质中, both 和 都具有独特的 DELLA 结构域。顺式作用元件分析表明,几乎所有的 基因都含有光响应元件,同时还鉴定了激素响应元件、环境响应元件(低温或防御响应元件)和分生组织组织相关元件。基于转录组数据和 RT-qPCR 表达模式,我们分析了 和 基因在不同发育阶段、激素和三种非生物胁迫下的表达。亚细胞定位分析表明, 和 都定位于细胞核。转录激活分析表明,这两个基因都具有自我激活活性。综上所述,本研究结果表明, 基因家族参与了杉木对环境胁迫的响应。对 基因的进一步研究为探索杉木中 DELLA 蛋白的潜在调控网络提供了有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c6a/11594883/b1af516ce504/ijms-25-12262-g001.jpg

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