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用于 PAL-XFEL 的时间分辨连续飞秒晶体学的实验方法。

Experimental approaches for time-resolved serial femtosecond crystallography at PAL-XFEL.

作者信息

Park Jaehyun, Nam Ki Hyun

机构信息

Pohang Accelerator Laboratory, Pohang University of Science and Technology, Pohang, Republic of Korea.

College of General Education, Kookmin University, Seoul, Republic of Korea.

出版信息

Methods Enzymol. 2024;709:131-160. doi: 10.1016/bs.mie.2024.10.005. Epub 2024 Oct 28.

Abstract

Understanding the structures and dynamics of biomolecules and chemical compounds is crucial for deciphering their molecular functions and mechanisms. Serial femtosecond crystallography (SFX) using X-ray free-electron lasers (XFELs) is a useful technique for determining structures at room temperature, while minimizing radiation damage. Time-resolved serial femtosecond crystallography (TR-SFX), which uses an optical laser or a mixing device, allows molecular dynamic visualization during a reaction at specific time points. Because the XFEL beamline has unique properties for beams and instruments, understanding the beamline system is essential to conduct TR-SFX experiments and develop related technologies. In this study, we introduce an experimental system for performing TR-SFX using a Nano Crystallography and Coherent Imaging (NCI) experimental hutch at the Pohang Accelerator Laboratory XFEL (PAL-XFEL). Specifically, we present the XFEL properties of the PAL-XFEL and the main instruments in the NCI experimental hutch. In addition, the characteristics and uses of the sample delivery methods for TR-SFX and the general sample preparation process are discussed. Furthermore, the general time schedule and experimental procedures for TR-SFX during the beam time are outlined, along with data analysis programs. This chapter contributes to understanding the performance of TR-SFX experiments conducted at the PAL-XFEL NCI experimental hutch.

摘要

理解生物分子和化学化合物的结构和动态对于破译它们的分子功能和机制至关重要。使用 X 射线自由电子激光(XFEL)的连续飞秒晶体学(SFX)是在室温下确定结构的有用技术,同时最大限度地减少辐射损伤。使用光学激光或混合设备的时间分辨连续飞秒晶体学(TR-SFX)允许在特定时间点的反应过程中进行分子动态可视化。由于 XFEL 光束线具有光束和仪器的独特特性,因此了解光束线系统对于进行 TR-SFX 实验和开发相关技术至关重要。在这项研究中,我们介绍了在浦项加速器实验室 XFEL(PAL-XFEL)的纳米晶体学和相干成像(NCI)实验小屋里进行 TR-SFX 的实验系统。具体来说,我们介绍了 PAL-XFEL 的 XFEL 特性和 NCI 实验小屋里的主要仪器。此外,还讨论了用于 TR-SFX 的样品输送方法的特点和用途以及一般的样品制备过程。此外,还概述了在光束时间内进行 TR-SFX 的一般时间表和实验程序以及数据分析程序。本章有助于了解在 PAL-XFEL NCI 实验小屋里进行的 TR-SFX 实验的性能。

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