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L. 中基因家族成员的全基因组鉴定及表达谱分析

Genome-wide identification and expression profile of gene family members in L.

作者信息

Li Jiahao, Shao Lingyu, Wang Qian, Shi Liyu, Wu Wei, Chen Wei, Yang Zhenfeng, Li Saisai

机构信息

Zhejiang Key Laboratory of Intelligent Food Logistic and Processing, College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo, China.

出版信息

Front Plant Sci. 2024 Nov 19;15:1492026. doi: 10.3389/fpls.2024.1492026. eCollection 2024.

DOI:10.3389/fpls.2024.1492026
PMID:39628526
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11613742/
Abstract

The () gene family is associated with the hypersensitive response (HR) in plant defense against pathogens. Although rice ( L.) is a crucial food crop, studies on its genes are limited. This study identified six members, categorized into three phylogenetic clades. The analyses of phylogenetics, gene structures, and collinear relationships revealed a high conservation of these genes, featuring the stomatin/prohibitin/flotillin/HflK/C domain. genes were regulated by -acting elements, including ARE, SARE, DRE, LTR, and GARE. were widely expressed in multiple plant organs, including roots, stems, and leaves. These genes respond to various abiotic stresses (like drought and low temperature) and hormone treatments (including ABA, SA, GA, and MeJA) with overlapping yet distinct expression patterns. Our results indicate that are involved in abiotic stresses and hormone responses, which provides a basis for further functional analysis of OsHIRs in rice crop plants.

摘要

（）基因家族与植物抵御病原体的过敏反应（HR）相关。尽管水稻（L.）是一种重要的粮食作物，但其基因研究却很有限。本研究鉴定出六个成员，分为三个系统发育分支。系统发育、基因结构和共线关系分析表明这些基因具有高度保守性，其特征是含有气孔蛋白/禁止素/ flotillin / HflK / C结构域。基因受顺式作用元件调控，包括ARE、SARE、DRE、LTR和GARE。在包括根、茎和叶在内的多个植物器官中广泛表达。这些基因对各种非生物胁迫（如干旱和低温）和激素处理（包括ABA、SA、GA和MeJA）有反应，表达模式重叠但又不同。我们的结果表明参与非生物胁迫和激素反应，这为进一步对水稻作物中的OsHIRs进行功能分析提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/2950ef80f335/fpls-15-1492026-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/c5f4e1d8a0a0/fpls-15-1492026-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/e45dd06aea8f/fpls-15-1492026-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/6efa1ce37bc6/fpls-15-1492026-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/3d58962b55ac/fpls-15-1492026-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/1abcaa4abb65/fpls-15-1492026-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/0a152c736dd9/fpls-15-1492026-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/2950ef80f335/fpls-15-1492026-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/c5f4e1d8a0a0/fpls-15-1492026-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/e45dd06aea8f/fpls-15-1492026-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/6efa1ce37bc6/fpls-15-1492026-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/3d58962b55ac/fpls-15-1492026-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/1abcaa4abb65/fpls-15-1492026-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/0a152c736dd9/fpls-15-1492026-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eed6/11613742/2950ef80f335/fpls-15-1492026-g007.jpg

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本文引用的文献

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Integrated Gene Co-expression Analysis and Metabolites Profiling Highlight the Important Role of ZmHIR3 in Maize Resistance to Stalk Rot.
整合基因共表达分析和代谢物谱分析凸显了ZmHIR3在玉米抗茎腐病中的重要作用。
Front Plant Sci. 2021 May 11;12:664733. doi: 10.3389/fpls.2021.664733. eCollection 2021.
4
Geminivirus C4 antagonizes the HIR1-mediated hypersensitive response by inhibiting the HIR1 self-interaction and promoting degradation of the protein.双生病毒 C4 通过抑制 HIR1 自身相互作用和促进蛋白降解来拮抗 HIR1 介导的过敏反应。
New Phytol. 2020 Feb;225(3):1311-1326. doi: 10.1111/nph.16208. Epub 2019 Oct 29.
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The hypersensitive induced reaction 3 (HIR3) gene contributes to plant basal resistance via an EDS1 and salicylic acid-dependent pathway.超敏诱导反应 3（HIR3）基因通过 EDS1 和水杨酸依赖途径促进植物基础抗性。
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MdHIR proteins repress anthocyanin accumulation by interacting with the MdJAZ2 protein to inhibit its degradation in apples.MdHIR 蛋白通过与 MdJAZ2 蛋白相互作用抑制其降解来抑制苹果中花色素苷的积累。
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