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五个文冠果品种泛基因家族的比较基因组分析及功能鉴定

Comparative genomic profiling of pan-gene family in five yellowhorn cultivars and functional identification of .

作者信息

Wang Juan, Liang Xizhen, Zhang Weiyang, Khalil Asma, Wu Yingying, Liu Sisi, Tahir Ul Qamar Muhammad, Wang Xingqiang, Guo Jinping

机构信息

College of Forestry, Shanxi Agricultural University, Taigu, Shanxi, China.

Integrative Omics and Molecular Modeling Laboratory, Department of Bioinformatics and Biotechnology, Government College University Faisalabad (GCUF), Faisalabad, Pakistan.

出版信息

Front Plant Sci. 2024 Nov 19;15:1481358. doi: 10.3389/fpls.2024.1481358. eCollection 2024.

Abstract

C-repeat binding factor () transcription factors can activate the expression of a series of cold regulation-related genes, thereby improving the cold resistance of plants. However, no detailed information is known about the biological functions of CBF proteins in yellowhorn (). In this study, a total of 59 gene family members were identified in five yellowhorn cultivars , and , revealing their intraspecific structural and functional diversity, with 8 core genes present in all cultivars. Phylogenetic and motif analyses highlighted conserved features and species-specific adaptations. Gene duplication events revealed that tandem duplicates are major factors involved in the expansion of this gene family in yellowhorn. Expression profiling under stress conditions demonstrated the involvement of these genes in stress responses. Of particular interest was , which showed strong induction by low-temperature stress. Overexpression of in was performed to validate its cold resistance function. The wild-type and T2 transgenic plants were subjected to low-temperature stress at 4°C for 0, 24, and 48 h, and physiological indexes related to antioxidant enzyme activity, photosynthesis, and cell membrane permeability were determined by comparative test. The results were as follows: the POD and SOD activities of transgenic lines were significantly higher than those of wild-type lines, indicating improved the adaptability of to low-temperature; The increase of relative conductivity and malondialdehyde, the decrease of chlorophyll content in transgenic lines were smaller than those of wild-type lines, indicating enhanced the resistance of to low-temperature stress. These results implied that has a positive regulatory effect on 's response to low-temperature stress.

摘要

C-重复结合因子(CBF)转录因子可以激活一系列与低温调节相关基因的表达,从而提高植物的抗寒性。然而,关于文冠果中CBF蛋白的生物学功能尚无详细信息。在本研究中,在5个文冠果品种中总共鉴定出59个CBF基因家族成员,揭示了它们种内的结构和功能多样性,所有品种中均存在8个核心基因。系统发育和基序分析突出了保守特征和物种特异性适应性。基因复制事件表明串联重复是文冠果中该基因家族扩展的主要因素。胁迫条件下的表达谱分析表明这些基因参与了胁迫反应。特别值得关注的是XyCBF1,它在低温胁迫下表现出强烈的诱导作用。在拟南芥中过表达XyCBF1以验证其抗寒功能。将野生型和T2转基因拟南芥植株在4℃下进行0、24和48小时的低温胁迫,并通过对比试验测定与抗氧化酶活性、光合作用和细胞膜通透性相关的生理指标。结果如下:转基因株系的POD和SOD活性显著高于野生型株系,表明XyCBF1提高了拟南芥对低温的适应性;转基因株系中相对电导率和丙二醛的增加、叶绿素含量的降低均小于野生型株系,表明XyCBF1增强了拟南芥对低温胁迫的抗性。这些结果表明XyCBF1对拟南芥对低温胁迫的反应具有正向调节作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a066/11613637/555668ca9e13/fpls-15-1481358-g001.jpg

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