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基于尿液挥发性有机化合物(VOCs)的高维分类前列腺癌诊断

Urinary volatile organic compounds (VOCs) based prostate cancer diagnosis via high-dimensional classification.

作者信息

Quaye George Ekow, Lee Wen-Yee, Noriega Landa Elizabeth, Badmos Sabur, Holbrook Kiana L, Su Xiaogang

机构信息

Department of Mathematical Sciences, University of Texas at El Paso, El Paso, TX, USA.

Department of Chemistry and Biochemistry, University of Texas at El Paso, El Paso, TX, USA.

出版信息

J Appl Stat. 2024 Apr 26;51(16):3468-3485. doi: 10.1080/02664763.2024.2346355. eCollection 2024.

Abstract

Early detection of prostate cancer is critical for successful treatment and survival. However, current diagnostic methods such as prostate-specific antigen (PSA) testing and digital rectal examination (DRE) have limitations in accuracy, specificity, and sensitivity. Recent research suggests that urinary volatile organic compounds (VOCs) could serve as potential biomarkers for prostate cancer diagnosis. In this study, urine samples from 337 PCa-positive and 233 PCa-negative patients were collected to develop a diagnosis model. The study involves a high dimensional (HD) classification problem due to the vast number of measured VOCs. Our findings reveal that regularized logistic regression outperforms numerous other classifiers when analyzing the collected data. In particular, we have selected a regularized logistic model with the SCAD (smoothly clipped absolute deviation) penalty as the final model, which attains an AUC (area under the ROC curve) of 0.748, in contrast to a PSA-based AUC of 0.540. These results underscore the potential of VOC-based diagnosis as a clinically feasible approach for PCa screening.

摘要

前列腺癌的早期检测对于成功治疗和生存至关重要。然而,目前的诊断方法,如前列腺特异性抗原(PSA)检测和直肠指检(DRE),在准确性、特异性和敏感性方面存在局限性。最近的研究表明,尿液挥发性有机化合物(VOCs)可作为前列腺癌诊断的潜在生物标志物。在本研究中,收集了337例前列腺癌阳性和233例前列腺癌阴性患者的尿液样本,以建立诊断模型。由于测量的VOCs数量众多,该研究涉及一个高维(HD)分类问题。我们的研究结果表明,在分析收集的数据时,正则化逻辑回归优于许多其他分类器。特别是,我们选择了具有SCAD(平滑截断绝对偏差)惩罚的正则化逻辑模型作为最终模型,其ROC曲线下面积(AUC)为0.748,而基于PSA的AUC为0.540。这些结果强调了基于VOC的诊断作为前列腺癌筛查临床可行方法的潜力。

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Urinary Volatile Organic Compounds for the Detection of Prostate Cancer.用于检测前列腺癌的尿液挥发性有机化合物
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