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量子力学/分子力学(QM/MM)模型的准确性如何?

How Accurate Are QM/MM Models?

作者信息

Ho Junming, Yu Haibo, Shao Yihan, Taylor Mackenzie, Chen Junbo

机构信息

School of Chemistry, The University of New South Wales, Sydney, NSW 2052, Australia.

Molecular Horizons, School of Chemistry and Molecular Bioscience, and ARC Centre of Excellence in Quantum Biotechnology, University of Wollongong, Wollongong, NSW 2522, Australia.

出版信息

J Phys Chem A. 2025 Feb 13;129(6):1517-1528. doi: 10.1021/acs.jpca.4c06521. Epub 2024 Dec 4.

Abstract

Despite the success and widespread use of QM/MM methods in modeling (bio)chemically important processes, their accuracy is still not well understood. A key reason is because these methods are ultimately approximations to direct QM calculations of very large systems, which are impractical to perform in most cases. We highlight recent progress toward the development of realistic model systems where it is possible to obtain full QM reference data to directly and systematically evaluate the effectiveness of different QM/MM generation schemes. These model systems are highly flexible and can be tailored to probe the sensitivity of a QM/MM model to different reaction types and simulation parameters such as pairing of QM and MM potentials, QM region size, and composition. It is envisaged that this strategy could be used to directly validate different QM/MM generation schemes and spur the development of more robust models in the future.

摘要

尽管量子力学/分子力学(QM/MM)方法在模拟(生物)化学重要过程方面取得了成功并得到广泛应用,但其准确性仍未得到很好的理解。一个关键原因是,这些方法最终是对非常大的系统进行直接量子力学计算的近似方法,在大多数情况下进行这种计算是不切实际的。我们强调了在开发现实模型系统方面的最新进展,在这些系统中可以获得完整的量子力学参考数据,以直接和系统地评估不同QM/MM生成方案的有效性。这些模型系统具有高度的灵活性,可以进行定制,以探究QM/MM模型对不同反应类型和模拟参数(如QM和MM势的配对、QM区域大小和组成)的敏感性。预计该策略可用于直接验证不同的QM/MM生成方案,并在未来推动更稳健模型的开发。

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