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通过³²P后标记分析法测定基因组5-甲基胞嘧啶

Genomic 5-methylcytosine determination by 32P-postlabeling analysis.

作者信息

Wilson V L, Smith R A, Autrup H, Krokan H, Musci D E, Le N N, Longoria J, Ziska D, Harris C C

出版信息

Anal Biochem. 1986 Feb 1;152(2):275-84. doi: 10.1016/0003-2697(86)90409-4.

DOI:10.1016/0003-2697(86)90409-4
PMID:3963364
Abstract

A simple and sensitive method for the quantitation of 5-methyldeoxycytidine in DNA has been developed by the adaptation of the Randerath 32P-postlabeling technique. Nucleic acids were digested to 3'-monophosphate nucleotides, which were converted to 32P-labeled 3',5'-bisphosphate nucleotides, the 3'-phosphate was cleaved by the action of nuclease P1, and the resultant 5'-[32P]-monophosphate nucleotides were separated by two-dimensional thin-layer chromatography. Less than 1 microgram of DNA was required for the precise quantitation of 5-methyldeoxycytidine content to a detectable limit of 0.01% of the total cytidine residues methylated. The genomic 5-methyldeoxycytidine content may thus be quantitated in tissue samples, small or selective cell populations, senescing or terminally differentiating cells, or DNA from any source. We report here, for the first time, the genomic 5-methyldeoxycytidine content of normal human bronchial epithelial and normal human pulmonary mesothelial cells. The chromatographic separation of all of the normal and some of the rare monophosphate deoxyribonucleotides and ribonucleotides has been characterized. Thus, 5-bromodeoxyuridine and the RNA contamination of DNA or the DNA contamination of RNA can also be quantitated during the same analysis.

摘要

通过对兰德拉斯32P后标记技术进行改进,开发出了一种简单且灵敏的定量DNA中5 - 甲基脱氧胞苷的方法。核酸被消化成3'-单磷酸核苷酸,然后转化为32P标记的3',5'-双磷酸核苷酸,3'-磷酸在核酸酶P1的作用下被切割,所得的5'-[32P]-单磷酸核苷酸通过二维薄层色谱法进行分离。精确测定5 - 甲基脱氧胞苷含量至可检测极限(占总甲基化胞苷残基的0.01%)所需的DNA量少于1微克。因此,基因组5 - 甲基脱氧胞苷含量可在组织样本、小的或选择性细胞群体、衰老或终末分化细胞或任何来源的DNA中进行定量。我们在此首次报告正常人支气管上皮细胞和正常人肺间皮细胞的基因组5 - 甲基脱氧胞苷含量。已对所有正常的和一些稀有的单磷酸脱氧核糖核苷酸及核糖核苷酸的色谱分离特性进行了表征。因此,在同一分析过程中也可对5 - 溴脱氧尿苷以及DNA的RNA污染或RNA的DNA污染进行定量。

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1
Genomic 5-methylcytosine determination by 32P-postlabeling analysis.通过³²P后标记分析法测定基因组5-甲基胞嘧啶
Anal Biochem. 1986 Feb 1;152(2):275-84. doi: 10.1016/0003-2697(86)90409-4.
2
Quantitation of 5-methylcytosine by one-dimensional high-performance thin-layer chromatography.通过一维高效薄层色谱法定量测定5-甲基胞嘧啶。
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Direct determination of uracil in [32P,uracil-3H]poly(dA.dT) and bisulfite-treated phage PM2 DNA.[32P,尿嘧啶-3H]聚(dA.dT)和亚硫酸氢盐处理的噬菌体PM2 DNA中尿嘧啶的直接测定。
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DNA adduction by phenol, hydroquinone, or benzoquinone in vitro but not in vivo: nuclease P1-enhanced 32P-postlabeling of adducts as labeled nucleoside bisphosphates, dinucleotides and nucleoside monophosphates.苯酚、对苯二酚或苯醌在体外而非体内的DNA加合作用:核酸酶P1增强的加合物32P后标记,加合物标记为核苷二磷酸、二核苷酸和核苷单磷酸。
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Biochemical mechanisms by which reutilization of DNA 5-methylcytosine is prevented in human cells.人类细胞中阻止DNA 5-甲基胞嘧啶再利用的生化机制。
Mutat Res. 1991 Jan;256(1):29-35. doi: 10.1016/0921-8734(91)90030-f.
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Nuclease P1-mediated enhancement of sensitivity of 32P-postlabeling test for structurally diverse DNA adducts.核酸酶P1介导增强32P后标记试验对结构多样的DNA加合物的敏感性。
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Comparative 32P-analysis of cigarette smoke-induced DNA damage in human tissues and mouse skin.香烟烟雾诱导的人体组织和小鼠皮肤DNA损伤的32P比较分析。
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10
The 5'-cytosine in CCGG1 is methylated in two eukaryotic DNAs and Msp I is sensitive to methylation at this site.在两个真核生物DNA中,CCGG1序列中的5'-胞嘧啶发生了甲基化,且Msp I对该位点的甲基化敏感。
Nucleic Acids Res. 1980 Sep 11;8(17):3829-40. doi: 10.1093/nar/8.17.3829.

引用本文的文献

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Comparison of methods for quantification of global DNA methylation in human cells and tissues.比较人细胞和组织中全基因组 DNA 甲基化定量方法。
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2
Interaction between DNMT1 and DNA replication reactions in the SV40 in vitro replication system.在SV40体外复制系统中,DNA甲基转移酶1(DNMT1)与DNA复制反应之间的相互作用。
Cancer Sci. 2008 Oct;99(10):1960-6. doi: 10.1111/j.1349-7006.2008.00913.x.
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A high-throughput and sensitive method to measure global DNA methylation: application in lung cancer.
一种用于测量全基因组DNA甲基化的高通量灵敏方法:在肺癌中的应用。
BMC Cancer. 2008 Aug 3;8:222. doi: 10.1186/1471-2407-8-222.
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Detection and quantification of 8-hydroxydeoxyguanosine adducts in peripheral blood of people exposed to ionizing radiation.电离辐射暴露人群外周血中8-羟基脱氧鸟苷加合物的检测与定量分析。
Environ Health Perspect. 1993 Mar;99:261-3. doi: 10.1289/ehp.9399261.
5
Development of a 32P-postlabeling assay for 7-methylguanines in human DNA.
Environ Health Perspect. 1993 Mar;99:233-5. doi: 10.1289/ehp.9399233.
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Chemical carcinogen-induced decreases in genomic 5-methyldeoxycytidine content of normal human bronchial epithelial cells.化学致癌物诱导正常人支气管上皮细胞基因组5-甲基脱氧胞苷含量降低。
Proc Natl Acad Sci U S A. 1987 May;84(10):3298-301. doi: 10.1073/pnas.84.10.3298.
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Analysis of macromolecular ethylene oxide adducts.大分子环氧乙烷加合物的分析
Int Arch Occup Environ Health. 1988;60(3):141-4. doi: 10.1007/BF00378688.