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阿卜杜勒阿齐兹国王大学医院胶囊数据集:来自沙特阿拉伯的一个新型小肠内镜图像库。

King Abdulaziz University Hospital Capsule dataset: A novel small-bowel endoscopic image repository from Saudi Arabia.

作者信息

Ghandorh Hamza, Bali Hamza H, Yafooz Wael M S, Boulila Wadii, Alsahafi Majid

机构信息

Department of Computer Science, College of Computer Science and Engineering, Taibah University, Medina, Saudi Arabia.

Division of Gastroenterology, Department of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia.

出版信息

Data Brief. 2024 Nov 8;57:111093. doi: 10.1016/j.dib.2024.111093. eCollection 2024 Dec.

DOI:10.1016/j.dib.2024.111093
PMID:39633978
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11615536/
Abstract

Wireless Capsule Endoscopy (WCE) has fundamentally transformed diagnostic methodologies for small-bowel (SB) abnormalities, providing a comprehensive and non-invasive gastrointestinal assessment in contrast to conventional endoscopic procedures. The King Abdulaziz University Hospital Capsule (KAUHC) dataset comprises annotated WCE images specifically curated for Saudi Arabian residents. Comprising 10.7 million frames derived from 157 studies, KAUHC has been classified into Normal, Arteriovenous Malformations, and Ulcer categories. Following the application of specific inclusion and exclusion criteria, 3301 labeled frames derived from WCE 86 studies were identified. Upon admission of patients, the data collection phase of KAUHC was initiated, involving the administration of the OMOM capsule and the use of the OMOM recording device for video documentation. A thorough evaluation of these recordings was undertaken by multiple gastroenterologists to identify any pathological abnormalities. The identified observations are subsequently extracted, categorized, and prepared for validation using Machine Learning (ML) classifiers. The dataset aims not only to address the scarcity of annotated endoscopic imaging resources in the Middle East but also to advance the development of diagnostic tools for ML applications in SB abnormalities and exploratory research on gastrointestinal diseases.

摘要

无线胶囊内镜(WCE)从根本上改变了小肠(SB)异常的诊断方法,与传统内镜检查相比,它能提供全面且无创的胃肠道评估。阿卜杜勒阿齐兹国王大学医院胶囊(KAUHC)数据集包含专门为沙特阿拉伯居民精心挑选的带注释的WCE图像。KAUHC由来自157项研究的1070万帧图像组成,已被分为正常、动静脉畸形和溃疡类别。在应用特定的纳入和排除标准后,从86项WCE研究中确定了3301个带标签的帧。患者入院后,KAUHC的数据收集阶段开始,包括使用OMOM胶囊和OMOM记录设备进行视频记录。多名胃肠病学家对这些记录进行了全面评估,以识别任何病理异常。随后提取已识别的观察结果,进行分类,并准备使用机器学习(ML)分类器进行验证。该数据集不仅旨在解决中东地区带注释的内镜成像资源稀缺的问题,还旨在推动用于SB异常的ML应用诊断工具的开发以及胃肠道疾病的探索性研究。

相似文献

1
King Abdulaziz University Hospital Capsule dataset: A novel small-bowel endoscopic image repository from Saudi Arabia.阿卜杜勒阿齐兹国王大学医院胶囊数据集:来自沙特阿拉伯的一个新型小肠内镜图像库。
Data Brief. 2024 Nov 8;57:111093. doi: 10.1016/j.dib.2024.111093. eCollection 2024 Dec.
2
Pixel-wise annotation for clear and contaminated regions segmentation in wireless capsule endoscopy images: A multicentre database.用于无线胶囊内窥镜图像中清晰和污染区域分割的逐像素标注:一个多中心数据库。
Data Brief. 2024 Sep 10;57:110927. doi: 10.1016/j.dib.2024.110927. eCollection 2024 Dec.
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Deep learning for registration of region of interest in consecutive wireless capsule endoscopy frames.基于深度学习的无线胶囊内窥镜连续帧中感兴趣区域的配准。
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Gastroenterologist-Level Identification of Small-Bowel Diseases and Normal Variants by Capsule Endoscopy Using a Deep-Learning Model.胶囊内镜使用深度学习模型对小肠疾病和正常变异进行胃肠病学家级别的识别。
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The role of wireless capsule endoscopy in investigating unexplained iron deficiency anemia after negative endoscopic evaluation of the upper and lower gastrointestinal tract.无线胶囊内镜在上、下消化道内镜检查阴性后对不明原因缺铁性贫血进行调查中的作用。
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Initial experience of video capsule endoscopy at a tertiary center in Saudi Arabia.沙特阿拉伯一家三级医疗中心的视频胶囊内镜检查初步经验。
Saudi J Gastroenterol. 2018 Nov-Dec;24(6):355-359. doi: 10.4103/sjg.SJG_110_18.

本文引用的文献

1
Efficient-gastro: optimized EfficientNet model for the detection of gastrointestinal disorders using transfer learning and wireless capsule endoscopy images.高效胃肠:使用迁移学习和无线胶囊内窥镜图像检测胃肠道疾病的优化高效神经网络模型
PeerJ Comput Sci. 2024 Mar 11;10:e1902. doi: 10.7717/peerj-cs.1902. eCollection 2024.
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Public Imaging Datasets of Gastrointestinal Endoscopy for Artificial Intelligence: a Review.用于人工智能的胃肠道内镜公共成像数据集:综述。
J Digit Imaging. 2023 Dec;36(6):2578-2601. doi: 10.1007/s10278-023-00844-7. Epub 2023 Sep 21.
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Computer-Aided Bleeding Detection Algorithms for Capsule Endoscopy: A Systematic Review.
计算机辅助胶囊内镜下出血检测算法:系统评价。
Sensors (Basel). 2023 Aug 14;23(16):7170. doi: 10.3390/s23167170.
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Capsule endoscopy - a non-invasive modality to investigate the GI tract: out with the old and in with the new?胶囊内镜——一种用于检查胃肠道的非侵入性手段:旧的去了,新的来了?
Expert Rev Gastroenterol Hepatol. 2022 Jul;16(7):591-599. doi: 10.1080/17474124.2022.2089113. Epub 2022 Jun 23.
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Utility of preoperative small-bowel endoscopy for hemorrhagic lesions in the small intestine.术前小肠内镜检查对小肠出血病变的应用价值。
Surg Today. 2012 Jun;42(6):536-41. doi: 10.1007/s00595-011-0109-1. Epub 2011 Dec 27.
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Fields of applications, diagnostic yields and findings of OMOM capsule endoscopy in 2400 Chinese patients.2400 例中国患者 OMOM 胶囊内镜的应用领域、诊断效果及发现。
World J Gastroenterol. 2010 Jun 7;16(21):2669-76. doi: 10.3748/wjg.v16.i21.2669.
7
A meta-analysis of the yield of capsule endoscopy compared to double-balloon enteroscopy in patients with small bowel diseases.小肠疾病患者中胶囊内镜与双气囊小肠镜检查结果的荟萃分析。
World J Gastroenterol. 2007 Aug 28;13(32):4372-8. doi: 10.3748/wjg.v13.i32.4372.
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A pooled analysis to evaluate results of capsule endoscopy trials.一项评估胶囊内镜检查试验结果的汇总分析。
Endoscopy. 2005 Oct;37(10):960-5. doi: 10.1055/s-2005-870353.