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用于通过数字病理学进行脑肿瘤检测的深度学习驱动的宏观人工智能分割模型:基于太赫兹成像的人工智能诊断基础。

Deep learning-driven macroscopic AI segmentation model for brain tumor detection via digital pathology: Foundations for terahertz imaging-based AI diagnostics.

作者信息

Yim Myeong Suk, Kim Yun Heung, Bark Hyeon Sang, Oh Seung Jae, Maeng Inhee, Shim Jin-Kyoung, Chang Jong Hee, Kang Seok-Gu, Yoo Byeong Cheol, Kwon Jae Gwang, Byun Jungsup, Yeo Woon-Ha, Jung Seung-Hwan, Ryu Han-Cheol, Kim Se Hoon, Choi Hyun Ju, Ji Young Bin

机构信息

Gimhae Biomedical Center, Gimhae Biomedical Industry Promotion Agency (GBIA), Gimhae, 05969, Republic of Korea.

DX Business Division, Deepnoid.Inc, Seoul, 08376, Republic of Korea.

出版信息

Heliyon. 2024 Nov 15;10(22):e40452. doi: 10.1016/j.heliyon.2024.e40452. eCollection 2024 Nov 30.

DOI:10.1016/j.heliyon.2024.e40452
PMID:39634425
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11616600/
Abstract

We used deep learning methods to develop an AI model capable of autonomously delineating cancerous regions in digital pathology images (H&E-stained images). By using a transgenic brain tumor model derived from the TS13-64 brain tumor cell line, we digitized a total of 187 H&E-stained images and annotated the cancerous regions in these images to compile a dataset. A deep learning approach was executed through DEEP:PHI, which abstracts Python coding complexities, thereby simplifying the execution of AI training protocols for users. By employing the Image Crop with Mask technique and patch generation method, we not only maintained an appropriate data class balance but also overcame the challenge of limited computing resources. This approach enabled us to successfully develop an AI training model that autonomously segments cancerous areas. This AI model enables the provision of guiding images for determining cancerous areas with minimal assistance from neuropathologists. In addition, the high-quality, large dataset curated for training using the proposed approach contributes to the development of novel terahertz imaging-based AI cancer diagnosis technologies and accelerates technological advancements.

摘要

我们使用深度学习方法开发了一个人工智能模型,该模型能够在数字病理学图像(苏木精-伊红染色图像)中自动勾勒出癌区。通过使用源自TS13-64脑肿瘤细胞系的转基因脑肿瘤模型,我们总共将187张苏木精-伊红染色图像数字化,并对这些图像中的癌区进行注释以编制一个数据集。通过DEEP:PHI执行深度学习方法,该方法抽象出Python编码复杂性,从而为用户简化人工智能训练协议的执行。通过采用带掩码的图像裁剪技术和补丁生成方法,我们不仅保持了适当的数据类平衡,还克服了计算资源有限的挑战。这种方法使我们能够成功开发一个自动分割癌区的人工智能训练模型。这个人工智能模型能够在神经病理学家的最少协助下提供用于确定癌区的引导图像。此外,使用所提出的方法精心策划的高质量、大数据集有助于基于太赫兹成像的新型人工智能癌症诊断技术的开发,并加速技术进步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/473626fa8d89/gr10.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/473626fa8d89/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/a0d7f05c405b/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/667c072531de/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/dcce48f8de62/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/f2810af0d91d/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/f456230dc983/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/8d0773fe4f7f/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/74d168dcfc03/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c369/11616600/809322a502b4/gr8.jpg
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本文引用的文献

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Near real-time intraoperative brain tumor diagnosis using stimulated Raman histology and deep neural networks.利用受激拉曼组织学和深度神经网络进行近实时术中脑瘤诊断。
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Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.全球癌症统计数据 2018:GLOBOCAN 对全球 185 个国家/地区 36 种癌症的发病率和死亡率的估计。
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