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一种用于快速检测……的比色环介导等温扩增检测法(c-LAMP)

A colorimetric loop-mediated isothermal amplification assay (c-LAMP) for rapid detection of .

作者信息

Sridapan Thanawat, Jaturapaktrarak Chalisa, Rujirawat Thidarat, Jiaranaikulwanich Atisak, Yurayart Chompoonek, Krajaejun Theerapong

机构信息

Department of Pathology, Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, 10400, Thailand.

Research Center, Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, 10400, Thailand.

出版信息

Heliyon. 2024 Nov 17;10(22):e40478. doi: 10.1016/j.heliyon.2024.e40478. eCollection 2024 Nov 30.

Abstract

Pythiosis, caused by , is a severe infectious disease affecting humans and animals worldwide. There is an urgent need for a simple and rapid detection method for pythiosis, especially in remote areas where this disease is prevalent. To address this, a colorimetric loop-mediated isothermal amplification assay (c-LAMP) using hydroxynaphthol blue dye as a color indicator has been developed. This method utilized a one-step closed-tube system under a single temperature reaction to detect , minimizing DNA carry-over contamination and eliminating the need for expensive tools. The test result can be easily read through the color change from violet (negative) to sky blue (positive). When tested with DNA samples from ( = 51) and other fungi ( = 70), c-LAMP showed a detection sensitivity, specificity, and accuracy of 100.0 %, 95.7 %, and 97.5 %, respectively. The assay detection limit was 1 x 10 ng of DNA template, 10,000 times lower than the reference multiplex PCR assay (m-PCR). c-LAMP also showed a faster assay turnaround time, taking only 65 min, as opposed to the 180 min required for m-PCR. This newly established c-LAMP is rapid, cost-effective, and efficient, making it a promising tool for detecting in resource-limited laboratories.

摘要

由[病原体名称未给出]引起的腐皮病是一种严重的传染病,影响着全球的人类和动物。迫切需要一种简单快速的腐皮病检测方法,尤其是在这种疾病流行的偏远地区。为了解决这一问题,已开发出一种以羟基萘酚蓝染料作为颜色指示剂的比色环介导等温扩增检测法(c-LAMP)。该方法在单一温度反应下采用一步式闭管系统来检测[病原体名称未给出],最大限度地减少了DNA残留污染,并且无需昂贵的工具。通过从紫色(阴性)到天蓝色(阳性)的颜色变化可以轻松读取测试结果。当用来自[样本来源未给出](n = 51)的DNA样本和其他真菌(n = 70)进行测试时,c-LAMP的检测灵敏度、特异性和准确性分别为100.0%、95.7%和97.5%。该检测方法的检测限为1×10 ng DNA模板,比参考多重聚合酶链反应检测法(m-PCR)低10000倍。c-LAMP的检测周转时间也更快,仅需65分钟,而m-PCR则需要180分钟。这种新建立的c-LAMP快速、经济高效,使其成为在资源有限的实验室中检测[病原体名称未给出]的一种有前景的工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0652/11617755/c3a634b4d048/gr1.jpg

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