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多组学分析阐明了奶牛严重乳房裂性皮炎病变中宿主与微生物群的相互作用。

Multi-omics analysis elucidates the host-microbiome interplay in severe udder cleft dermatitis lesions in dairy cows.

作者信息

Vermeersch A S, Van Nieuwerburgh F, Gansemans Y, Ali M, Ducatelle R, Geldhof P, Deforce D, Callens J, Opsomer G

机构信息

Department of Internal Medicine, Reproduction and Population Medicine, Faculty of Veterinary Medicine, Ghent University, 9820 Merelbeke, Belgium.

Laboratory of Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, 9000 Ghent, Belgium.

出版信息

JDS Commun. 2024 Mar 29;5(6):598-601. doi: 10.3168/jdsc.2023-0537. eCollection 2024 Nov.

DOI:10.3168/jdsc.2023-0537
PMID:39650020
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11624335/
Abstract

Udder cleft dermatitis is a skin disease in dairy cattle that is characterized by painful, large open wounds between the udder halves or at the front udder attachment. Its impact on animal welfare and production warrants an in-depth investigation of its pathogenesis. The present study delves into the pathophysiology of severe udder cleft dermatitis, employing a multi-omics approach by integrating transcriptomic and metagenomic data obtained from samples of severe udder cleft dermatitis lesions and healthy udder skin of dairy cattle. All dominant features selected from the virulence factor, taxonomic, and transcriptomic datasets, except for the facultative pathogen , form a network that could be associated with the healthy udder skin. The severe udder cleft dermatitis-associated exhibited a negative correlation with these virulence factors and genes, but was not correlated with the other commensal bacteria in the analysis. Examining the different components interacting with each other could advance our understanding of the pathogenesis of severe udder cleft dermatitis.

摘要

乳房裂皮炎是奶牛的一种皮肤病,其特征是乳房两半之间或乳房前部附着处出现疼痛的、大的开放性伤口。它对动物福利和生产的影响值得对其发病机制进行深入研究。本研究通过整合从患有严重乳房裂皮炎病变的奶牛样本和健康乳房皮肤中获得的转录组和宏基因组数据,采用多组学方法深入探究严重乳房裂皮炎的病理生理学。从毒力因子、分类学和转录组数据集中选择的所有主要特征,除了兼性病原菌外,形成了一个可能与健康乳房皮肤相关的网络。与严重乳房裂皮炎相关的[具体内容缺失]与这些毒力因子和基因呈负相关,但在分析中与其他共生细菌无关。研究相互作用的不同成分可以增进我们对严重乳房裂皮炎发病机制的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d83/11624335/1e71a9c19aa2/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d83/11624335/fdee08598ab6/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d83/11624335/1e71a9c19aa2/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d83/11624335/fdee08598ab6/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d83/11624335/1e71a9c19aa2/gr1.jpg

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本文引用的文献

1
An in-depth investigation of the microbiota and its virulence factors associated with severe udder cleft dermatitis lesions.深入研究与严重乳房裂伤性皮炎病变相关的微生物群及其毒力因子。
J Dairy Sci. 2024 May;107(5):3219-3234. doi: 10.3168/jds.2023-24180. Epub 2023 Dec 21.
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Is an Anti-Inflammatory Commensal Bacterium with Decreased Abundance in Gut Microbiota of Patients with Metabolic Liver Disease.是一种抗炎共生菌,在代谢性肝病患者的肠道微生物群中丰度降低。
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Severe udder cleft dermatitis lesion transcriptomics points to an impaired skin barrier, defective wound repair and a dysregulated inflammatory response as key elements in the pathogenesis.
严重的乳房裂伤性皮炎病变转录组学表明,皮肤屏障受损、伤口修复缺陷和炎症反应失调是发病机制中的关键因素。
PLoS One. 2023 Jul 24;18(7):e0288347. doi: 10.1371/journal.pone.0288347. eCollection 2023.
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Transcription factor RORα enforces stability of the Th17 cell effector program by binding to a Rorc cis-regulatory element.转录因子 RORα 通过结合 Rorc 顺式调控元件来加强 Th17 细胞效应程序的稳定性。
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Pseudomonas aeruginosa Production of Hydrogen Cyanide Leads to Airborne Control of Staphylococcus aureus Growth in Biofilm and Lung Environments.铜绿假单胞菌产生氰化氢导致生物膜和肺部环境中金黄色葡萄球菌生长的空气传播控制。
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Faecalibaculum rodentium remodels retinoic acid signaling to govern eosinophil-dependent intestinal epithelial homeostasis.肠道罗斯氏菌重塑视黄酸信号,以调控嗜酸性粒细胞依赖的肠道上皮细胞稳态。
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Sci Rep. 2022 Aug 18;12(1):14070. doi: 10.1038/s41598-022-17111-4.
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PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data.PathoFact:一种用于预测宏基因组数据中毒力因子和抗菌药物耐药基因的管道。
Microbiome. 2021 Feb 17;9(1):49. doi: 10.1186/s40168-020-00993-9.
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A shotgun metagenomic investigation of the microbiota of udder cleft dermatitis in comparison to healthy skin in dairy cows.用 shotgun 宏基因组学方法调查奶牛乳房皱裂皮炎和健康皮肤的微生物菌群。
PLoS One. 2020 Dec 2;15(12):e0242880. doi: 10.1371/journal.pone.0242880. eCollection 2020.
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