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神经科学中使用蟑螂模型教授机器学习的低成本方法。

Low-Cost Approaches in Neuroscience to Teach Machine Learning Using a Cockroach Model.

作者信息

Truong Vincent, Moore Johnathan E, Ricoy Ulises M, Verpeut Jessica L

机构信息

Department of Psychology, Arizona State University, Tempe, Arizona 85287.

Department of Neuroscience, University of Arizona, Tucson, Arizona 85721.

出版信息

eNeuro. 2024 Dec 17;11(12). doi: 10.1523/ENEURO.0173-24.2024. Print 2024 Dec.

DOI:10.1523/ENEURO.0173-24.2024
PMID:39653390
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11654359/
Abstract

In an effort to increase access to neuroscience education in underserved communities, we created an educational program that utilizes a simple task to measure place preference of the cockroach () and the open-source free software, SLEAP Estimates Animal Poses (SLEAP) to quantify behavior. Cockroaches ( = 18) were trained to explore a linear track for 2 min while exposed to either air, vapor, or vapor with nicotine from a port on one side of the linear track over 14 d. The time the animal took to reach the port was measured, along with distance traveled, time spent in each zone, and velocity. As characterizing behavior is challenging and inaccessible for nonexperts new to behavioral research, we created an educational program using the machine learning algorithm, SLEAP, and cloud-based (i.e., Google Colab) low-cost platforms for data analysis. We found that SLEAP was within a 0.5% margin of error when compared with manually scoring the data. Cockroaches were found to have an increased aversive response to vapor alone compared with those that only received air. Using SLEAP, we demonstrate that the - coordinate data can be further classified into behavior using dimensionality-reducing clustering methods. This suggests that the linear track can be used to examine nicotine preference for the cockroach, and SLEAP can provide a fast, efficient way to analyze animal behavior. Moreover, this educational program is available for free for students to learn a complex machine learning algorithm without expensive hardware to study animal behavior.

摘要

为了增加在服务不足社区获得神经科学教育的机会,我们创建了一个教育项目,该项目利用一个简单任务来测量蟑螂的位置偏好,并使用开源免费软件SLEAP(估计动物姿势)来量化行为。18只蟑螂在14天内接受训练,在暴露于来自线性轨道一侧端口的空气、蒸汽或含尼古丁蒸汽的情况下,探索线性轨道2分钟。测量动物到达端口所需的时间,以及行进距离、在每个区域花费的时间和速度。由于对行为研究新手来说,表征行为具有挑战性且难以做到,我们使用机器学习算法SLEAP和基于云的(即谷歌Colab)低成本平台创建了一个教育项目用于数据分析。我们发现,与手动对数据评分相比,SLEAP的误差幅度在0.5%以内。与只接受空气的蟑螂相比,发现蟑螂对单独的蒸汽有更强的厌恶反应。使用SLEAP,我们证明可以使用降维聚类方法将坐标数据进一步分类为行为。这表明线性轨道可用于研究蟑螂对尼古丁的偏好,并且SLEAP可以提供一种快速、有效的方式来分析动物行为。此外,这个教育项目可供学生免费学习复杂的机器学习算法,而无需昂贵的硬件来研究动物行为。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/54d309477e08/eneuro-11-ENEURO.0173-24.2024-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/a081dfbfc19c/eneuro-11-ENEURO.0173-24.2024-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/2ac539bdd2ec/eneuro-11-ENEURO.0173-24.2024-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/2acdfcff36d3/eneuro-11-ENEURO.0173-24.2024-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/494d74145ea8/eneuro-11-ENEURO.0173-24.2024-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/8b54d031f3a0/eneuro-11-ENEURO.0173-24.2024-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/a3c7053f5430/eneuro-11-ENEURO.0173-24.2024-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/c22c5d4ec9c0/eneuro-11-ENEURO.0173-24.2024-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/54d309477e08/eneuro-11-ENEURO.0173-24.2024-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/a081dfbfc19c/eneuro-11-ENEURO.0173-24.2024-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/2ac539bdd2ec/eneuro-11-ENEURO.0173-24.2024-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/2acdfcff36d3/eneuro-11-ENEURO.0173-24.2024-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/494d74145ea8/eneuro-11-ENEURO.0173-24.2024-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/8b54d031f3a0/eneuro-11-ENEURO.0173-24.2024-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/a3c7053f5430/eneuro-11-ENEURO.0173-24.2024-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/c22c5d4ec9c0/eneuro-11-ENEURO.0173-24.2024-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2102/11654359/54d309477e08/eneuro-11-ENEURO.0173-24.2024-g008.jpg

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