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Identification of Diagnostically Relevant Biomarkers in Patients with Coronary Artery Disease by Comprehensive Analysis.

作者信息

Wu Zimin, Mo Sisi, Huang Zuyuan, Zheng Baoshi

机构信息

Department of Cardiovascular Surgery Ward, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region, 530021, People's Republic of China.

Department of Medical Research, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region, 530021, People's Republic of China.

出版信息

J Inflamm Res. 2024 Dec 5;17:10495-10513. doi: 10.2147/JIR.S494438. eCollection 2024.


DOI:10.2147/JIR.S494438
PMID:39654862
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11627109/
Abstract

BACKGROUND: Peripheral biomarkers are becoming an important method by which to monitor the progression of coronary artery disease (CAD). Not only are they minimally invasive and early detection, but they can also be used for classification and diagnosis of disease as well as prognostic assessment. Currently, this approach is still in the exploratory stage. The purpose of this research is to determine the diagnostic value and therapeutic potential of the endoplasmic reticulum stress (ERS) genes in CAD. METHODS: The clinical information and RNA sequence data were obtained from the GEO database and subsequently subjected to a series of optimization and visualization processes using various analytical techniques, including WGCNA, LASSO, SVM-RFE feature selection, random forest (RF), and XGBoost, as well as R software and Cytoscape. Finally, immunofluorescence was used to validate the analysis. RESULTS: We identify 6 key ERS differentially expressed genes (ERS-DEGs) (UFL1, HSPA1A, ERLIN1, LRRK2, ERN1, SERINC3) for constructing diagnostic models. They showed qualified diagnostic ability as biomarkers of CAD within training dataset (AUC = 0.803) and validation dataset (AUC = 0.776 and 0.797). Association analyses showed that peripheral immune cells, immune checkpoint genes and Human Leukocyte Antigen (HLA) genes had characteristic distributions in CAD and were closely related to specific ERS genes. Meanwhile, we found that HSPA1A may involve the MAPK signaling pathway in CAD. CONCLUSION: We constructed an efficient diagnostic model based on 6 key ERS-DEGs and explored their regulatory networks and effects on the CAD immune microenvironment. UFL1, HSPA1A, ERLIN1, LRRK2, ERN1, SERINC3 are expected to be biomarkers for CAD.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/f5be5ce09889/JIR-17-10495-g0012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/133da56a2568/JIR-17-10495-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/cba30002717a/JIR-17-10495-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/bb51646afcf2/JIR-17-10495-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/9739aa5d8c75/JIR-17-10495-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/1178468f1845/JIR-17-10495-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/905d8d246c72/JIR-17-10495-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/18c7cd2decae/JIR-17-10495-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/ed2f592146d4/JIR-17-10495-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/6b10f79ff941/JIR-17-10495-g0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/64a28837951f/JIR-17-10495-g0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/eb85ddf6b993/JIR-17-10495-g0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/f5be5ce09889/JIR-17-10495-g0012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/133da56a2568/JIR-17-10495-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/cba30002717a/JIR-17-10495-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/bb51646afcf2/JIR-17-10495-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/9739aa5d8c75/JIR-17-10495-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/1178468f1845/JIR-17-10495-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/905d8d246c72/JIR-17-10495-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/18c7cd2decae/JIR-17-10495-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/ed2f592146d4/JIR-17-10495-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/6b10f79ff941/JIR-17-10495-g0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/64a28837951f/JIR-17-10495-g0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/eb85ddf6b993/JIR-17-10495-g0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d8e/11627109/f5be5ce09889/JIR-17-10495-g0012.jpg

相似文献

[1]
Identification of Diagnostically Relevant Biomarkers in Patients with Coronary Artery Disease by Comprehensive Analysis.

J Inflamm Res. 2024-12-5

[2]
Identification of diagnostic biomarkers and therapeutic targets in peripheral immune landscape from coronary artery disease.

J Transl Med. 2022-9-5

[3]
Immune-related potential biomarkers and therapeutic targets in coronary artery disease.

Front Cardiovasc Med. 2023-1-6

[4]
Identification of potential M2 macrophage-associated diagnostic biomarkers in coronary artery disease.

Biosci Rep. 2022-12-22

[5]
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Front Cardiovasc Med. 2025-2-26

[6]
Identification of hub genes and their correlation with immune infiltration in coronary artery disease through bioinformatics and machine learning methods.

J Thorac Dis. 2022-7

[7]
Identification of immune-associated biomarkers of diabetes nephropathy tubulointerstitial injury based on machine learning: a bioinformatics multi-chip integrated analysis.

BioData Min. 2024-7-1

[8]
Identification of Endoplasmic Reticulum Stress-Related Biomarkers in Coronary Artery Disease.

Cardiovasc Ther. 2024-7-3

[9]
Classifiers for Predicting Coronary Artery Disease Based on Gene Expression Profiles in Peripheral Blood Mononuclear Cells.

Int J Gen Med. 2021-9-15

[10]
Differential expression and significance of peripheral blood genes in coronary artery heart disease.

J Thorac Dis. 2022-9

本文引用的文献

[1]
Bacterial amyloid curli activates the host unfolded protein response via IRE1α in the presence of HLA-B27.

Gut Microbes. 2024

[2]
LRRK2 in Parkinson's disease: upstream regulation and therapeutic targeting.

Trends Mol Med. 2024-10

[3]
Endoplasmic reticulum stress-mediated cell death in cardiovascular disease.

Cell Stress Chaperones. 2024-2

[4]
Differential Expression of Circulating Damage-Associated Molecular Patterns in Patients with Coronary Artery Ectasia.

Biomolecules. 2023-12-21

[5]
Neutrophil counts and cardiovascular disease.

Eur Heart J. 2023-12-14

[6]
LRRK2 is involved in the chemotaxis of neutrophils and differentiated HL-60 cells, and the inhibition of LRRK2 kinase activity increases fMLP-induced chemotactic activity.

Cell Commun Signal. 2023-10-30

[7]
Tumor-repopulating cell-derived microparticles elicit cascade amplification of chemotherapy-induced antitumor immunity to boost anti-PD-1 therapy.

Signal Transduct Target Ther. 2023-10-25

[8]
Identification and verification of diagnostic biomarkers in recurrent pregnancy loss via machine learning algorithm and WGCNA.

Front Immunol. 2023

[9]
Blockade of CXCR4 promotes macrophage autophagy through the PI3K/AKT/mTOR pathway to alleviate coronary heart disease.

Int J Cardiol. 2023-12-1

[10]
Atheroprotective Aspects of Heat Shock Proteins.

Int J Mol Sci. 2023-7-21

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