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通过长读长纳米孔测序完成T7902的基因组测序。

Closing the genome of T7902 by long-read nanopore sequencing.

作者信息

Gasser Mark T, Liu Annie, Flatau Ron, Altamia Marvin A, Filone Claire Marie, Distel Daniel L

机构信息

Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, USA.

Ocean Genome Legacy Center, Northeastern University, Nahant, Massachusetts, USA.

出版信息

Microbiol Resour Announc. 2025 Jan 16;14(1):e0048424. doi: 10.1128/mra.00484-24. Epub 2024 Dec 10.

DOI:10.1128/mra.00484-24
PMID:39655922
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11737186/
Abstract

We present the complete closed circular genome sequence derived from the Oxford Nanopore sequencing of the shipworm endosymbiont, T7902 (DSM 15152, ATCC 39867), originally isolated from the shipworm, (1). This sequence will aid in the comparative genomics of shipworm endosymbionts and the understanding of the host-symbiont evolution.

摘要

我们展示了从船蛆内共生菌T7902（DSM 15152，ATCC 39867）的牛津纳米孔测序中获得的完整闭合环状基因组序列，该内共生菌最初从船蛆中分离得到(1)。该序列将有助于船蛆内共生菌的比较基因组学研究以及对宿主 - 共生体进化的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5a/11737186/3e109e65adde/mra.00484-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5a/11737186/3e109e65adde/mra.00484-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5a/11737186/3e109e65adde/mra.00484-24.f001.jpg

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本文引用的文献

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RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.RefSeq：通过蛋白质家族模型编纂扩展原核生物基因组注释管道的覆盖范围。
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Secondary Metabolism in the Gill Microbiota of Shipworms (Teredinidae) as Revealed by Comparison of Metagenomes and Nearly Complete Symbiont Genomes.
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Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
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