利用16S rRNA基因对波多黎各拉哈斯稻田土壤中的微生物群落进行表征。
Characterization of the microbial communities in paddy soils in Lajas, Puerto Rico using 16S rRNA gene.
作者信息
Rivera-Lopez Edwin Omar, Huertas-Miranda Javier, Rios-Velazquez Carlos
机构信息
Food Science and Technology Program, University of Puerto Rico at Mayagüez, Mayagüez, Puerto Rico, USA.
Microbial Biotechnology and Bioprospecting Laboratory, Biology Department, University of Puerto Rico at Mayagüez, Mayagüez, Puerto Rico, USA.
出版信息
Microbiol Resour Announc. 2025 Jan 16;14(1):e0100824. doi: 10.1128/mra.01008-24. Epub 2024 Dec 10.
Abstract
The microbiota in the paddy soils of the Lajas Agricultural Experimental Station at the University of Puerto Rico (LAES-UPR) plays a crucial role in agricultural ecosystems. Despite being at an experimental station, these soils represent natural environments supporting rice cultivation. Microbial diversity was evaluated during pre-harvest and post-harvest periods.
摘要
位于波多黎各大学拉哈斯农业实验站（LAES-UPR）的稻田土壤中的微生物群落在农业生态系统中起着至关重要的作用。尽管这是一个实验站，但这些土壤代表了支持水稻种植的自然环境。在收获前和收获后阶段对微生物多样性进行了评估。
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本文引用的文献
1
Trophic niches reflect compositional differences in microbiota among Caribbean sea urchins.
PeerJ. 2021 Aug 31;9:e12084. doi: 10.7717/peerj.12084. eCollection 2021.
2
Biotechnological Processes in Microbial Amylase Production.
Biomed Res Int. 2017;2017:1272193. doi: 10.1155/2017/1272193. Epub 2017 Feb 9.
3
Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China.
Appl Environ Microbiol. 2006 Jun;72(6):3832-45. doi: 10.1128/AEM.02869-05.
4
Microbiology of flooded rice paddies.
FEMS Microbiol Rev. 2000 Dec;24(5):625-45. doi: 10.1111/j.1574-6976.2000.tb00563.x.
5
Comparison of different methods for the isolation and purification of total community DNA from soil.
J Microbiol Methods. 1999 Dec;39(1):1-16. doi: 10.1016/s0167-7012(99)00093-7.
6
Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples.
Appl Environ Microbiol. 1999 Nov;65(11):4715-24. doi: 10.1128/AEM.65.11.4715-4724.1999.
7
DNA recovery from soils of diverse composition.
Appl Environ Microbiol. 1996 Feb;62(2):316-22. doi: 10.1128/aem.62.2.316-322.1996.
8
Recovery of DNA from soils and sediments.
Appl Environ Microbiol. 1988 Dec;54(12):2908-15. doi: 10.1128/aem.54.12.2908-2915.1988.
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