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变构效应剂对处于R四级结构的血红蛋白晶体中氧结合的影响。

Effects of allosteric effectors on oxygen binding to crystals of hemoglobin in the R-quaternary structure.

作者信息

Shibayama Naoya

机构信息

Division of Biophysics, Department of Physiology, Jichi Medical University, Shimotsuke, Tochigi, Japan.

出版信息

Protein Sci. 2025 Jan;34(1):e5232. doi: 10.1002/pro.5232.

DOI:10.1002/pro.5232
PMID:39660833
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11632842/
Abstract

Much is known about how allosteric effectors influence the equilibrium between the relaxed (R) and tense (T) states of hemoglobin (Hb), but little is known about how and to what extent the effectors lower the intrinsic O affinity of each allosteric state, especially the R-state. Here, we provide a thorough characterization of the O equilibria of effector-bound and unbound R-quaternary form crystals of horse Hb without a quaternary structural switching. In the absence of effectors, R crystals of horse Hb were shown to bind O noncooperatively with a very high affinity virtually identical to that of R crystals of human Hb. We found that the effector bezafibrate (BZF) and its derivative L35 lower the overall O affinity of R crystals by approximately a factor of 3 and 2, respectively, while both maintaining noncooperative oxygenation. These effects are observed regardless of whether the effectors are co-crystallized or soaked into the effector-free protein crystals with a different lattice, confirming that the observed affinity reduction is induced by the BZF derivatives and not by crystal packing forces. Our findings, combined with available co-crystal structural data, suggest that the BZF derivatives lower the O affinity of the R-quaternary structure of Hb through structural constraints imposed by a quaternary shift slightly toward T. Additionally, since no co-crystal of R-state Hb with the effector inositol hexakisphosphate (IHP) is available, we only present an IHP-soaking experiment showing little change in O affinity, and poor IHP binding to the R crystal structure of horse Hb is suggested.

摘要

关于变构效应剂如何影响血红蛋白(Hb)的松弛(R)态和紧张(T)态之间的平衡,我们已经了解很多,但对于这些效应剂如何以及在多大程度上降低每种变构状态的内在氧亲和力,尤其是R态的氧亲和力,我们却知之甚少。在此,我们对马Hb的效应剂结合型和未结合型R四级结构晶体的氧平衡进行了全面表征,且不存在四级结构转换。在没有效应剂的情况下,马Hb的R晶体被证明以非协同方式结合氧气,其亲和力非常高,实际上与人Hb的R晶体相同。我们发现,效应剂苯扎贝特(BZF)及其衍生物L35分别将R晶体的整体氧亲和力降低了约3倍和2倍,同时两者都保持非协同氧合作用。无论效应剂是共结晶还是浸泡到具有不同晶格的无效应剂蛋白质晶体中,都会观察到这些效应,这证实了观察到的亲和力降低是由BZF衍生物诱导的,而不是由晶体堆积力引起的。我们的研究结果与现有的共晶体结构数据相结合,表明BZF衍生物通过向T态略微四级移位所施加的结构限制来降低Hb的R四级结构的氧亲和力。此外,由于没有R态Hb与效应剂肌醇六磷酸(IHP)的共晶体,我们仅展示了一个IHP浸泡实验,该实验显示氧亲和力变化不大,并表明IHP与马Hb的R晶体结构结合不佳。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/d250f3171e86/PRO-34-e5232-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/df970360d536/PRO-34-e5232-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/cda552d48d67/PRO-34-e5232-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/68f808b2bd3a/PRO-34-e5232-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/e252d9d81576/PRO-34-e5232-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/e691de02b8e5/PRO-34-e5232-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/cfdb00cf0a8e/PRO-34-e5232-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/d250f3171e86/PRO-34-e5232-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/df970360d536/PRO-34-e5232-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/cda552d48d67/PRO-34-e5232-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/68f808b2bd3a/PRO-34-e5232-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/e252d9d81576/PRO-34-e5232-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/e691de02b8e5/PRO-34-e5232-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/cfdb00cf0a8e/PRO-34-e5232-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3799/11632842/d250f3171e86/PRO-34-e5232-g002.jpg

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本文引用的文献

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The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM.通过冷冻电镜阐明的鳄鱼血红蛋白独特的变构特性。
Nat Commun. 2024 Aug 2;15(1):6505. doi: 10.1038/s41467-024-49947-x.
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Experiments on Hemoglobin in Single Crystals and Silica Gels Distinguish among Allosteric Models.对单晶和硅胶中血红蛋白的实验区分了变构模型。
Biophys J. 2015 Sep 15;109(6):1264-72. doi: 10.1016/j.bpj.2015.04.037. Epub 2015 May 30.
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Experimental basis for a new allosteric model for multisubunit proteins.多亚基蛋白质全新变构模型的实验基础
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Capturing the hemoglobin allosteric transition in a single crystal form.捕获血红蛋白变构转变的单晶形式。
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Reaction trajectory revealed by a joint analysis of protein data bank.通过对蛋白质数据库的联合分析揭示反应轨迹。
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A survey of hemoglobin quaternary structures.血红蛋白四级结构研究综述。
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Structures and oxygen affinities of crystalline human hemoglobin C (β6 Glu->Lys) in the R and R2 quaternary structures.晶体态人血红蛋白 C(β6Glu->Lys)在 R 和 R2 四级结构中的结构和氧亲和力。
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Biochim Biophys Acta. 2008 Sep;1784(9):1146-58. doi: 10.1016/j.bbapap.2008.04.025. Epub 2008 May 8.
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