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用于酵母展示筛选的优化单细胞门控

Optimized single-cell gates for yeast display screening.

作者信息

Pan Xiaoli, de Souza Matheus O, Figueiras Francisco M, Huang Aric, Banach Bailey B, Wolfe Jacy R, Pirhanov Azady, Madan Bharat, DeKosky Brandon J

机构信息

The Ragon Institute of Mass General, MIT, and Harvard, 600 Main St, Cambridge, MA 02139, USA.

Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Room 66-350, Cambridge, MA 02139, USA.

出版信息

Protein Eng Des Sel. 2025 Jan 10;38. doi: 10.1093/protein/gzae018.

DOI:10.1093/protein/gzae018
PMID:39667035
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11723770/
Abstract

Yeast display is a widely used technology in antibody discovery and protein engineering. The cell size of yeast enables fluorescence-activated cell sorting (FACS) to precisely screen gene libraries, including for multi-parameter selection of protein phenotypes. However, yeast cells show a broader size distribution than mammalian cells that complicates single-cell gate determination for FACS. In this report, we analyze several yeast display gating options in detail and present an optimized strategy to select single yeast cells via flow cytometry. These data reveal optimized single-cell gating strategies to support robust and high-efficiency yeast display studies.

摘要

酵母展示是一种在抗体发现和蛋白质工程中广泛应用的技术。酵母的细胞大小使得荧光激活细胞分选(FACS)能够精确筛选基因文库,包括用于蛋白质表型的多参数选择。然而,酵母细胞的大小分布比哺乳动物细胞更广泛,这使得FACS的单细胞门控确定变得复杂。在本报告中,我们详细分析了几种酵母展示门控选项,并提出了一种通过流式细胞术选择单个酵母细胞的优化策略。这些数据揭示了优化的单细胞门控策略,以支持稳健且高效的酵母展示研究。

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本文引用的文献

1
Protein Engineering and High-Throughput Screening by Yeast Surface Display: Survey of Current Methods.酵母表面展示进行蛋白质工程与高通量筛选:现有方法综述
Small Sci. 2023 Dec;3(12). doi: 10.1002/smsc.202300095. Epub 2023 Nov 8.
2
Yeast-based screening platforms to understand and improve human health.基于酵母的筛选平台,以了解和改善人类健康。
Trends Biotechnol. 2024 Oct;42(10):1258-1272. doi: 10.1016/j.tibtech.2024.04.003. Epub 2024 Apr 26.
3
Development of Recombinant Antibody by Yeast Surface Display Technology.利用酵母表面展示技术开发重组抗体。
Curr Res Pharmacol Drug Discov. 2024 Jan 20;6:100174. doi: 10.1016/j.crphar.2024.100174. eCollection 2024.
4
Large-scale antibody immune response mapping of splenic B cells and bone marrow plasma cells in a transgenic mouse model.大规模抗体免疫反应映射脾 B 细胞和骨髓浆细胞在转基因小鼠模型。
Front Immunol. 2023 Jun 5;14:1137069. doi: 10.3389/fimmu.2023.1137069. eCollection 2023.
5
Titrating Avidity of Yeast-Displayed Proteins Using a Transcriptional Regulator.使用转录调控因子滴定酵母展示蛋白的亲和力。
ACS Synth Biol. 2023 Feb 17;12(2):419-431. doi: 10.1021/acssynbio.2c00351. Epub 2023 Feb 2.
6
Expanding and improving nanobody repertoires using a yeast display method: Targeting SARS-CoV-2.利用酵母展示方法扩展和改进纳米抗体库:针对 SARS-CoV-2。
J Biol Chem. 2023 Mar;299(3):102954. doi: 10.1016/j.jbc.2023.102954. Epub 2023 Jan 28.
7
Mapping monoclonal anti-SARS-CoV-2 antibody repertoires against diverse coronavirus antigens.针对多种冠状病毒抗原的 SARS-CoV-2 单克隆抗体反应谱的绘制。
Front Immunol. 2022 Sep 2;13:977064. doi: 10.3389/fimmu.2022.977064. eCollection 2022.
8
Strategies to Screen Anti-AQP4 Antibodies from Yeast Surface Display Libraries.从酵母表面展示文库中筛选抗水通道蛋白4抗体的策略。
Antibodies (Basel). 2022 Jun 5;11(2):39. doi: 10.3390/antib11020039.
9
Droplet flow cytometry for single-cell analysis.用于单细胞分析的微滴流式细胞术。
RSC Adv. 2021 Jun 14;11(34):20944-20960. doi: 10.1039/d1ra02636d. eCollection 2021 Jun 9.
10
Yeast Surface Display System: Strategies for Improvement and Biotechnological Applications.酵母表面展示系统:改进策略与生物技术应用
Front Bioeng Biotechnol. 2022 Jan 10;9:794742. doi: 10.3389/fbioe.2021.794742. eCollection 2021.