Grobler D L, Klein J D, Dicken M L, Mmonwa K, Soekoe M, van Staden M, Hagen S B, Maduna S N, Bester-van der Merwe A E
Molecular Breeding and Biodiversity Group, Department of Genetics Stellenbosch University Stellenbosch South Africa.
KwaZulu-Natal Sharks Board Umhlanga Rocks KwaZulu-Natal South Africa.
Ecol Evol. 2024 Dec 12;14(12):e70644. doi: 10.1002/ece3.70644. eCollection 2024 Dec.
Globally, hammerhead sharks have experienced severe declines owing to continued overexploitation and anthropogenic change. The smooth hammerhead shark remains understudied compared to other members of the family Sphyrnidae. Despite its vulnerable status, a comprehensive understanding of its genetic landscape remains lacking in many regions worldwide. The present study aimed to conduct a fine-scale genomic assessment of within the highly dynamic marine environment of South Africa's coastline, using thousands of single nucleotide polymorphisms (SNPs) derived from restriction site-associated DNA sequencing (3RAD). A combination of differentiation-based outlier detection methods and genotype-environment association (GEA) analysis was employed in . Subsequent assessments of putatively adaptive loci revealed a distinctive south to east genetic cline. Among these, notable correlations between adaptive variation and sea-surface dissolved oxygen and salinity were evident. Conversely, analysis of 111,243 neutral SNP markers revealed a lack of regional population differentiation, a finding that remained consistent across various analytical approaches. These results provide evidence for the presence of differential selection pressures within a limited spatial range, despite high gene flow implied by the selectively neutral dataset. This study offers notable insights regarding the potential impacts of genomic variation in response to fluctuating environmental conditions in the circumglobally distributed .
在全球范围内,由于持续的过度开发和人为变化,双髻鲨数量急剧下降。与双髻鲨科的其他成员相比,无沟双髻鲨的研究仍然较少。尽管其处于易危状态,但在世界许多地区,对其遗传格局仍缺乏全面了解。本研究旨在利用来自限制性位点相关DNA测序(3RAD)的数千个单核苷酸多态性(SNP),对南非海岸线高度动态的海洋环境中的无沟双髻鲨进行精细尺度的基因组评估。研究采用了基于分化的异常值检测方法和基因型-环境关联(GEA)分析相结合的方法。对假定的适应性位点的后续评估揭示了从南到东的独特遗传梯度。其中,适应性变异与海面溶解氧和盐度之间存在明显的相关性。相反,对111,243个中性SNP标记的分析表明,缺乏区域种群分化,这一发现 across various analytical approaches保持一致。这些结果提供了证据,表明尽管选择性中性数据集暗示了高基因流,但在有限的空间范围内仍存在差异选择压力。本研究为全球分布的无沟双髻鲨基因组变异对环境条件波动的潜在影响提供了重要见解。