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通过定向进化、原子设计和祖先序列重建工程改造的稳定且多功能的半乳糖氧化酶

Stable and Promiscuous Galactose Oxidases Engineered by Directed Evolution, Atomistic Design, and Ancestral Sequence Reconstruction.

作者信息

Keser Merve, Mateljak Ivan, Kittl Roman, Ludwig Roland, Risso Valeria A, Sanchez-Ruiz Jose M, Gonzalez-Perez David, Alcalde Miguel

机构信息

Department of Biocatalysis, Institute of Catalysis, ICP-CSIC, 28049 Madrid, Spain.

EvoEnzyme S.L., Parque Científico de Madrid, 28049 Madrid, Spain.

出版信息

ACS Synth Biol. 2025 Jan 17;14(1):239-246. doi: 10.1021/acssynbio.4c00653. Epub 2024 Dec 13.

Abstract

Galactose oxidase (GOase) is a versatile biocatalyst with a wide range of potential applications, ranging from synthetic chemistry to bioelectrochemical devices. Previous GOase engineering by directed evolution generated the M-RQW mutant, with unprecedented new-to-nature oxidation activity at the C6-OH group of glucose, and a mutational backbone that helped to unlock its promiscuity toward other molecules, including secondary alcohols. In the current study, we have used the M-RQW mutant as a starting point to engineer a set of GOases that are very thermostable and that are easily produced at high titers in yeast, enzymes with latent activities applicable to sustainable chemistry. To boost the generation of sequence and functional diversity, the directed evolution workflow incorporated one-shot computational mutagenesis by the PROSS algorithm and ancestral sequence reconstruction. This synergetic approach helped produce a rapid rise in functional expression by , achieving g/L production in a fed-batch bioreactor while the different GOases designed were resistant to pH and high temperature, with enhancements up to 27 °C over the parental M-RQW. These designs displayed latent activity against glucose and an array of secondary aromatic alcohols with different degrees of bulkiness, becoming a suitable point of departure for the future engineering of industrial GOases.

摘要

半乳糖氧化酶(GOase)是一种多功能生物催化剂,具有广泛的潜在应用,从合成化学到生物电化学装置。以前通过定向进化对GOase进行的工程改造产生了M-RQW突变体,它在葡萄糖的C6-OH基团上具有前所未有的新的天然氧化活性,以及一个有助于释放其对其他分子(包括仲醇)的混杂性的突变骨架。在当前的研究中,我们以M-RQW突变体为起点,设计了一组非常耐热且易于在酵母中高滴度产生的GOase,这些酶具有适用于可持续化学的潜在活性。为了促进序列和功能多样性的产生,定向进化工作流程结合了通过PROSS算法进行的一次性计算诱变和祖先序列重建。这种协同方法有助于使功能表达迅速提高,在补料分批生物反应器中实现克/升的产量,同时设计的不同GOase对pH和高温具有抗性,比亲本M-RQW的耐热性提高了27°C。这些设计对葡萄糖和一系列具有不同体积大小的仲芳醇显示出潜在活性,成为未来工业用GOase工程的合适起点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5146/11925331/92243a54d01b/sb4c00653_0001.jpg

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