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本文引用的文献

1
Virulence and antimicrobial-resistance of shiga toxin-producing E. coli (STEC) Isolated from edible shellfish and its public health significance.从食用贝类中分离出的产志贺毒素大肠杆菌（STEC）的毒力和抗微生物耐药性及其公共卫生意义。
Arch Microbiol. 2022 Jul 21;204(8):510. doi: 10.1007/s00203-022-03114-2.
2
Polypolish: Short-read polishing of long-read bacterial genome assemblies.多聚波兰：长读细菌基因组组装的短读抛光。
PLoS Comput Biol. 2022 Jan 24;18(1):e1009802. doi: 10.1371/journal.pcbi.1009802. eCollection 2022 Jan.
3
Bayesian risk assessment model of human cryptosporidiosis cases following consumption of raw Eastern oysters () contaminated with oocysts in the Hillsborough River system in Prince Edward Island, Canada.加拿大爱德华王子岛希尔斯伯勒河水系中食用受卵囊污染的生东部牡蛎后人类隐孢子虫病病例的贝叶斯风险评估模型。
Food Waterborne Parasitol. 2020 Mar 19;19:e00079. doi: 10.1016/j.fawpar.2020.e00079. eCollection 2020 Jun.
4
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
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KBase: The United States Department of Energy Systems Biology Knowledgebase.KBase：美国能源部系统生物学知识库。
Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163.
6
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
7
Vibrio bacteria in raw oysters: managing risks to human health.生牡蛎中的弧菌：管理对人类健康的风险。
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8
Prevalence of Salmonella and Vibrio spp. in seafood products sold in Singapore.新加坡销售的海鲜产品中沙门氏菌和弧菌属的流行情况。
J Food Prot. 2012 Jul;75(7):1320-3. doi: 10.4315/0362-028X.JFP-12-007.
9
Aichi virus, norovirus, astrovirus, enterovirus, and rotavirus involved in clinical cases from a French oyster-related gastroenteritis outbreak.来自法国一起与牡蛎相关的肠胃炎暴发临床病例中涉及的爱知病毒、诺如病毒、星状病毒、肠道病毒和轮状病毒。
J Clin Microbiol. 2008 Dec;46(12):4011-7. doi: 10.1128/JCM.01044-08. Epub 2008 Oct 8.

从加拿大采集的牡蛎中分离出的[具体物种1]的完整基因组和[具体物种2]的基因组草图。

Complete genomes of and draft genome of isolates from oysters collected in Canada.

作者信息

Shutinoski Bojan, Flint Annika, Tamber Sandeep, Weedmark Kelly, Banerjee Swapan

机构信息

Bureau of Microbial Hazards, Health Canada, Ottawa, Ontario, Canada.

出版信息

Microbiol Resour Announc. 2025 Jan 16;14(1):e0058524. doi: 10.1128/mra.00585-24. Epub 2024 Dec 13.

DOI:10.1128/mra.00585-24
PMID:39670722
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11737156/
Abstract

Human enteric pathogens in fresh uncooked seafood are of concern to human health. Here, we report the complete genomes of bacteria not commonly found in freshly harvested seafood, two Typhimurium strains and one draft genome, isolated from harvested oysters grown in Canada.

摘要

新鲜未煮熟海鲜中的人类肠道病原体关乎人类健康。在此，我们报告了从加拿大养殖的收获牡蛎中分离出的、在新鲜收获海鲜中不常见的细菌的完整基因组，两株鼠伤寒沙门氏菌菌株和一个草图基因组。