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用于研究电缆细菌的多学科方法。

Multidisciplinary methodologies used in the study of cable bacteria.

作者信息

Wawryk Michaela M H, Ley Philip, Vasquez-Cardenas Diana, Tabor Rico F, Cook Perran L M

机构信息

School of Chemistry, Monash University, Clayton 3800 VIC, Australia.

Department of Biology, University of Antwerp, Wilrijk 2020, Belgium.

出版信息

FEMS Microbiol Rev. 2025 Jan 14;49. doi: 10.1093/femsre/fuae030.

DOI:10.1093/femsre/fuae030
PMID:39673715
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11774119/
Abstract

Cable bacteria are a unique type of filamentous microorganism that can grow up to centimetres long and are capable of long-distance electron transport over their entire lengths. Due to their unique metabolism and conductive capacities, the study of cable bacteria has required technical innovations, both in adapting existing techniques and developing entirely new ones. This review discusses the existing methods used to study eight distinct aspects of cable bacteria research, including the challenges of culturing them in laboratory conditions, performing physical and biochemical extractions, and analysing the conductive mechanism. As cable bacteria research requires an interdisciplinary approach, methods from a range of fields are discussed, such as biogeochemistry, genomics, materials science, and electrochemistry. A critical analysis of the current state of each approach is presented, highlighting the advantages and drawbacks of both commonly used and emerging methods.

摘要

电缆细菌是一种独特的丝状微生物,其长度可达数厘米,能够在整个长度上进行长距离电子传输。由于其独特的代谢和导电能力,对电缆细菌的研究需要技术创新,包括对现有技术的改进和全新技术的开发。本综述讨论了用于研究电缆细菌的八个不同方面的现有方法,包括在实验室条件下培养它们的挑战、进行物理和生化提取以及分析导电机制。由于电缆细菌研究需要跨学科方法,因此讨论了一系列领域的方法,如生物地球化学、基因组学、材料科学和电化学。对每种方法的当前状态进行了批判性分析,突出了常用方法和新兴方法的优缺点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/da697bcc6b1d/fuae030fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/bc8c6425b22a/fuae030fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/348297a25a40/fuae030fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/cae379c01989/fuae030fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/460e36101a61/fuae030fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/90d3bf557252/fuae030fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/040a42f272b7/fuae030fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/61cd92027797/fuae030fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/55d3ca25fa28/fuae030fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/da697bcc6b1d/fuae030fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/bc8c6425b22a/fuae030fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/348297a25a40/fuae030fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/cae379c01989/fuae030fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/460e36101a61/fuae030fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/90d3bf557252/fuae030fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/040a42f272b7/fuae030fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/61cd92027797/fuae030fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/55d3ca25fa28/fuae030fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/710c/11774119/da697bcc6b1d/fuae030fig9.jpg

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本文引用的文献

1
Cable bacteria colonise new sediment environments through water column dispersal.缆菌通过水柱扩散在新的沉积物环境中定殖。
Environ Microbiol. 2024 Oct;26(10):e16694. doi: 10.1111/1462-2920.16694.
2
Long-distance electron transport in multicellular freshwater cable bacteria.多细胞淡水电缆菌中的长程电子传递。
Elife. 2024 Aug 29;12:RP91097. doi: 10.7554/eLife.91097.
3
Interaction of living cable bacteria with carbon electrodes in bioelectrochemical systems.生物电化学系统中活体电缆细菌与碳电极的相互作用。
Appl Environ Microbiol. 2024 Aug 21;90(8):e0079524. doi: 10.1128/aem.00795-24. Epub 2024 Jul 31.
4
Comparative genomic analysis of nickel homeostasis in cable bacteria.缆菌中镍稳态的比较基因组分析。
BMC Genomics. 2024 Jul 15;25(1):692. doi: 10.1186/s12864-024-10594-7.
5
Towards bioprocess engineering of cable bacteria: Establishment of a synthetic sediment.迈向缆线菌的生物工艺工程:合成沉积物的建立。
Microbiologyopen. 2024 Jun;13(3):e1412. doi: 10.1002/mbo3.1412.
6
Cable bacteria delay euxinia and modulate phosphorus release in coastal hypoxic systems.索状细菌可延缓沿海缺氧系统中的 euxinia 状态并调节磷的释放。
R Soc Open Sci. 2024 Apr 17;11(4):231991. doi: 10.1098/rsos.231991. eCollection 2024 Apr.
7
The organo-metal-like nature of long-range conduction in cable bacteria.缆细菌中长程传导的类有机金属性质。
Bioelectrochemistry. 2024 Jun;157:108675. doi: 10.1016/j.bioelechem.2024.108675. Epub 2024 Feb 25.
8
Cable bacteria: Living electrical conduits for biogeochemical cycling and water environment restoration.电缆细菌:用于生物地球化学循环和水环境修复的活体导电管道。
Water Res. 2024 Apr 1;253:121345. doi: 10.1016/j.watres.2024.121345. Epub 2024 Feb 20.
9
Closing the genome of unculturable cable bacteria using a combined metagenomic assembly of long and short sequencing reads.利用长读长和短读长测序的联合宏基因组组装完成不可培养丝状菌的基因组测序。
Microb Genom. 2024 Feb;10(2). doi: 10.1099/mgen.0.001197.
10
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Syst Appl Microbiol. 2024 Jan;47(1):126487. doi: 10.1016/j.syapm.2024.126487. Epub 2024 Jan 22.