Dai Jingyi, Zhou Ziyi, Zhao Yanru, Kong Fanjing, Zhai Zhenwei, Zhu Zhishan, Cai Jie, Huang Sha, Xu Ying, Sun Tao
School of Intelligent Medicine, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, Sichuan, China.
Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, 610072, Sichuan, China.
Eur J Med Chem. 2025 Feb 5;283:117162. doi: 10.1016/j.ejmech.2024.117162. Epub 2024 Dec 10.
Drug design has always been pursuing techniques with time- and cost-benefits. Virtual screening, generally classified as ligand-based (LBVS) and structure-based (SBVS) approaches, could identify active compounds in the large chemical library to reduce time and cost. Owing to the intrinsic flaws and complementary nature of both approaches, continued efforts have been made to combine them to mitigate limitations. Meanwhile, the emergence of machine learning (ML) endows them with opportunities to leverage vast amounts of data to improve their defects. However, few discussions on how to merge ML-improved LBVS and SBVS have been conducted. Therefore, this review provides insights into combined usage of ML-improved LBVS and SBVS to enlighten medicinal chemists to utilize these joint strategies to lift the screening efficiency as well as AI professionals to design novel techniques.
药物设计一直在追求具有时间和成本效益的技术。虚拟筛选通常分为基于配体(LBVS)和基于结构(SBVS)的方法,可以在大型化学库中识别活性化合物,以减少时间和成本。由于这两种方法的固有缺陷和互补性质,人们一直在不断努力将它们结合起来以减轻局限性。与此同时,机器学习(ML)的出现为它们提供了利用大量数据来改善其缺陷的机会。然而,关于如何合并经过ML改进的LBVS和SBVS的讨论很少。因此,本综述深入探讨了经过ML改进的LBVS和SBVS的联合使用,以启发药物化学家利用这些联合策略提高筛选效率,并启发人工智能专业人员设计新技术。