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一个与IGLV基因簇对齐的重复基因组区域表明其在多个鲟鱼物种中作为转录终止元件的作用。

A Repetitive Genomic Region Aligning with the IGLV Gene Cluster Suggests a Role as a Transcription Termination Element Across Several Sturgeon Species.

作者信息

Chouljenko Alexander V, Stanfield Brent A, Melnyk Tetiana O, Dutta Ojasvi, Chouljenko Vladimir N

机构信息

Department of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, Center for Marine Sciences and Technology, Morehead City, NC 28557, USA.

Department of Pathobiological Sciences, Louisiana State University School of Veterinary Medicine, Baton Rouge, LA 70803, USA.

出版信息

Int J Mol Sci. 2024 Nov 26;25(23):12685. doi: 10.3390/ijms252312685.

Abstract

This study focuses on the common presence of repetitive sequences within the sturgeon genome that may contribute to enhanced immune responses against infectious diseases. A repetitive 675 bp VAC-2M sequence in Russian sturgeon DNA that aligns with the Siberian sturgeon IGLV gene cluster was identified. A specific 218 bp long portion of the sequence was found to be identical between , and species, and NCBI blast analysis confirmed the presence of this DNA segment in the genome. Multiple mutated copies of the same genomic region were detected by PCR analysis, indicating that different versions of this highly repetitive sequence exist simultaneously within the same organism. The selection toward specific genetic differences appears to be highly conserved based on the sequence variations within DNA originating from fish grown at distant geographical regions and individual caviar grains from the same fish. The corresponding genomic region encompassing the 357 bp DNA sequence was cloned either ahead or after the human cytomegalovirus immediate early promoter (HCMV-IE) into a pBV-Luc reporter vector expressing the luciferase gene. The DNA segment significantly reduced luciferase expression in transient transfection/expression experiments. The results indicate that this genomic region functions as a transcription termination element that may affect antibody production in sturgeons.

摘要

本研究聚焦于鲟鱼基因组中重复序列的普遍存在,这些重复序列可能有助于增强对传染病的免疫反应。在俄罗斯鲟鱼DNA中鉴定出一个与西伯利亚鲟鱼IGLV基因簇对齐的675 bp重复VAC - 2M序列。发现该序列特定的218 bp长片段在[此处原文缺失物种名称]、[此处原文缺失物种名称]和[此处原文缺失物种名称]物种之间是相同的,并且NCBI比对分析证实了该DNA片段在[此处原文缺失物种名称]基因组中的存在。通过PCR分析检测到同一基因组区域的多个突变拷贝,表明在同一生物体内同时存在该高度重复序列的不同版本。基于来自遥远地理区域养殖的鱼类以及同一鱼的单个鱼子酱颗粒的DNA序列变异,对特定遗传差异的选择似乎高度保守。将包含357 bp DNA序列的相应[此处原文缺失物种名称]基因组区域,在人巨细胞病毒立即早期启动子(HCMV - IE)之前或之后克隆到表达荧光素酶基因的pBV - Luc报告载体中。在瞬时转染/表达实验中,该DNA片段显著降低了荧光素酶的表达。结果表明,该基因组区域作为一个转录终止元件发挥作用,可能影响鲟鱼体内抗体的产生。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/71da/11640988/0481bd062d18/ijms-25-12685-g001.jpg

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