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新型广谱烈性沙门氏菌噬菌体Salmonella Phage KKP_3822的表型特征及基因组分析,用于多重耐药菌株的生物防治

Phenotypic Characterization and Genome Analysis of New Broad-Spectrum Virulent Salmophage, Salmonella Phage KKP_3822, for Biocontrol of Multidrug-Resistant Strains.

作者信息

Wójcicki Michał, Shymialevich Dziyana, Średnicka Paulina, Emanowicz Paulina, Ostrowska Agnieszka, Cieślak Hanna, Sokołowska Barbara

机构信息

Department of Microbiology, Prof. Wacław Dąbrowski Institute of Agricultural and Food Biotechnology-State Research Institute, Rakowiecka 36 Str., 02-532 Warsaw, Poland.

Department of Nanobiotechnology, Institute of Biology, Warsaw University of Life Sciences (WULS-SGGW), Ciszewskiego 8 Str., 02-786 Warsaw, Poland.

出版信息

Int J Mol Sci. 2024 Dec 1;25(23):12930. doi: 10.3390/ijms252312930.

Abstract

is one of the main foodborne pathogens. Irrational antibiotic management has led to an increase in the incidence of multidrug-resistant strains. Bacteriophages may be an alternative method of food biopreservation and contribute to reducing the number of food poisonings requiring pharmacotherapy. This study aimed to isolate a bacteriophage (phage) targeting indigenous multidrug-resistant (MDR) strains, followed by their biological, morphological, and genomic characterization. In this study we isolated Salmonella phage KKP_3822, targeting MDR Manchester strain KKP 1213. Salmonella phage KKP_3822 retained high activity in the temperature range from -20 °C to 40 °C and active acidity from pH 3 to 11. Temperatures of 70 °C and 80 °C and extreme pH values (2 and 12) significantly reduced the phage titer. Its activity decreased proportionally to the time of UV exposure. Genome analysis (linear dsDNA with a length of 114,843 bp) revealed the presence of 27 tRNA genes. Proteins encoded by the vB_Sen-IAFB3822 phage were divided into functional modules related to (i) phage structure/assembly, (ii) DNA replication/modification/regulation, (iii) phage lysis, and (iv) DNA packaging into the capsid. No genes associated with antibiotic resistance or integration into the host genome, markers of temperate bacteriophages, were annotated in the Salmonella phage KKP_3822 genome. Based on morphological features and whole-genome sequence analysis, the newly isolated Salmonella phage KKP_3822 shows the greatest similarity to representatives of tailed phages from the class, family, and genus. Genome analysis confirmed the virulent nature of the Salmonella phage KKP_3822, making it a potential candidate for food biocontrol.

摘要

是主要的食源性病原体之一。不合理的抗生素管理导致了多重耐药菌株发病率的上升。噬菌体可能是食品生物保存的一种替代方法,并有助于减少需要药物治疗的食物中毒数量。本研究旨在分离一种针对本地多重耐药(MDR)菌株的噬菌体,随后对其进行生物学、形态学和基因组特征分析。在本研究中,我们分离出了针对多重耐药曼彻斯特菌株KKP 1213的沙门氏菌噬菌体KKP_3822。沙门氏菌噬菌体KKP_3822在-20℃至40℃的温度范围内以及pH值为3至11的活性酸度下保持高活性。70℃和80℃的温度以及极端pH值(2和12)显著降低了噬菌体滴度。其活性与紫外线照射时间成比例下降。基因组分析(长度为114,843 bp的线性双链DNA)显示存在27个tRNA基因。vB_Sen-IAFB3822噬菌体编码的蛋白质分为与(i)噬菌体结构/组装、(ii)DNA复制/修饰/调控、(iii)噬菌体裂解和(iv)DNA包装入衣壳相关的功能模块。在沙门氏菌噬菌体KKP_3822基因组中未注释到与抗生素抗性或整合到宿主基因组相关的基因,这些是温和噬菌体的标记。基于形态特征和全基因组序列分析,新分离的沙门氏菌噬菌体KKP_3822与 类、 科和 属的尾噬菌体代表显示出最大的相似性。基因组分析证实了沙门氏菌噬菌体KKP_3822的烈性性质,使其成为食品生物防治的潜在候选者。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8a2/11641169/fb71da9cb691/ijms-25-12930-g001.jpg

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