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三种新型 - 和 - 特异性噬菌体的生物学特征和基因组分析。

Biological Characterization and Genomic Analysis of Three Novel - and -Specific Virulent Phages.

机构信息

Culture Collection of Industrial Microorganisms-Microbiological Resources Center, Department of Microbiology, Prof. Wacław Dąbrowski Institute of Agricultural and Food Biotechnology-State Research Institute, Rakowiecka 36 Str., 02-532 Warsaw, Poland.

Department of Biotechnology and Food Microbiology, Institute of Food Sciences, Warsaw University of Life Sciences (WULS-SGGW), Nowoursynowska 166 Str., 02-776 Warsaw, Poland.

出版信息

Int J Mol Sci. 2024 May 29;25(11):5944. doi: 10.3390/ijms25115944.

Abstract

Due to the high microbiological contamination of raw food materials and the increase in the incidence of multidrug-resistant bacteria, new methods of ensuring microbiological food safety are being sought. One solution may be to use bacteriophages (so-called phages) as natural bacterial enemies. Therefore, the aim of this study was the biological and genomic characterization of three newly isolated - and -specific virulent bacteriophages as potential candidates for food biocontrol. Serratia phage KKP_3708 (vB_Sli-IAFB_3708), Serratia phage KKP_3709 (vB_Sma-IAFB_3709), and Enterobacter phage KKP_3711 (vB_Ecl-IAFB_3711) were isolated from municipal sewage against strain KKP 3654, strain KKP 3687, and strain KKP 3684, respectively. The effect of phage addition at different multiplicity of infection (MOI) rates on the growth kinetics of the bacterial hosts was determined using a Bioscreen C Pro growth analyzer. The phages retained high activity in a wide temperature range (from -20 °C to 60 °C) and active acidity values (pH from 3 to 12). Based on transmission electron microscopy (TEM) imaging and whole-genome sequencing (WGS), the isolated bacteriophages belong to the tailed bacteriophages from the class. Genomic analysis revealed that the phages have linear double-stranded DNA of size 40,461 bp (Serratia phage KKP_3708), 67,890 bp (Serratia phage KKP_3709), and 113,711 bp (Enterobacter phage KKP_3711). No virulence, toxins, or antibiotic resistance genes were detected in the phage genomes. The lack of lysogenic markers indicates that all three bacteriophages may be potential candidates for food biocontrol.

摘要

由于生食物材料的微生物污染程度高,以及多药耐药菌的发病率增加,人们正在寻找新的方法来确保食品微生物安全。一种解决方案可能是使用噬菌体(所谓的噬菌体)作为天然细菌的天敌。因此,本研究的目的是对三种新分离的 - 和 - 特异性烈性噬菌体进行生物学和基因组表征,作为食品生物防治的潜在候选物。从城市污水中分离到针对 菌株 KKP 3654、 菌株 KKP 3687 和 菌株 KKP 3684 的肠炎弧菌噬菌体 KKP_3708(vB_Sli-IAFB_3708)、肠炎弧菌噬菌体 KKP_3709(vB_Sma-IAFB_3709)和肠杆菌噬菌体 KKP_3711(vB_Ecl-IAFB_3711)。使用 Bioscreen C Pro 生长分析仪确定噬菌体在不同感染复数(MOI)率下添加对细菌宿主生长动力学的影响。噬菌体在较宽的温度范围(从-20°C 到 60°C)和活性酸度值(pH 值为 3 到 12)下保持高活性。基于透射电子显微镜(TEM)成像和全基因组测序(WGS),分离的噬菌体属于 类的长尾噬菌体。基因组分析表明,噬菌体具有大小为 40,461 bp 的线性双链 DNA(肠炎弧菌噬菌体 KKP_3708)、67,890 bp(肠炎弧菌噬菌体 KKP_3709)和 113,711 bp(肠杆菌噬菌体 KKP_3711)。噬菌体基因组中未检测到毒力、毒素或抗生素耐药基因。缺乏溶原性标记表明,这三种噬菌体都可能是食品生物防治的潜在候选物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed0c/11172527/ac9458b1235a/ijms-25-05944-g001.jpg

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