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基于穿刺的葡萄质地全基因组关联研究

Genome-Wide Association Study of Grape Texture Based on Puncture.

作者信息

Lin Meiling, Sun Lei, Liu Xuewei, Fan Xiucai, Zhang Ying, Jiang Jianfu, Liu Chonghuai

机构信息

Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450000, China.

ZhongYuan Research Center, Chinese Academy of Agricultural Sciences, Xinxiang 453424, China.

出版信息

Int J Mol Sci. 2024 Dec 5;25(23):13065. doi: 10.3390/ijms252313065.

Abstract

Grapes are grown extensively around the world and play a crucial role in overall fruit production globally. The quality of the grape is largely determined by the texture of the flesh, making it a key focus for grape breeders. Our study was conducted on 437 grape accessions using a puncture method to analyze berry texture characteristics. The results reveal strong correlations among the five texture parameters of grape accessions. Following the GWAS analysis using 2,124,668 population SNPs, 369 significant SNP locations linked to the grape berry texture were discovered. Through the process of gene annotation and expression analysis in the localization regions, several genes potentially linked to berry texture were identified, including , , , , and . , , and were identified as potentially more relevant to grape berry texture based on gene expression analysis. Further investigation through transient transformation demonstrated that overexpressing and resulted in notable changes in grape pulp texture. During this study, the berry textures of 437 grape accessions were comprehensively evaluated, and several important candidate genes were screened based on GWAS and analysis of gene function. This discovery paves the way for future research and breeding initiatives related to grape berry texture.

摘要

葡萄在世界各地广泛种植,在全球水果总产量中发挥着关键作用。葡萄的品质在很大程度上由果肉质地决定,这使其成为葡萄育种者的关键关注焦点。我们的研究对437份葡萄种质进行,采用穿刺法分析浆果质地特征。结果显示葡萄种质的五个质地参数之间存在强相关性。在使用2124668个群体单核苷酸多态性(SNP)进行全基因组关联研究(GWAS)分析后,发现了369个与葡萄浆果质地相关的显著SNP位点。通过在定位区域进行基因注释和表达分析,鉴定出了几个可能与浆果质地相关的基因,包括 、 、 、 和 。基于基因表达分析, 、 和 被确定为可能与葡萄浆果质地更相关。通过瞬时转化的进一步研究表明,过表达 和 会导致葡萄果肉质地发生显著变化。在这项研究中,对437份葡萄种质的浆果质地进行了全面评估,并基于GWAS和基因功能分析筛选出了几个重要的候选基因。这一发现为未来与葡萄浆果质地相关的研究和育种计划铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb95/11642401/c6a86b8a661c/ijms-25-13065-g001.jpg

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