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使用矩不变量对细菌形状进行量化能够在细胞质壁分离过程中区分不同群体。

Quantification of bacterial shape using moment invariants enables distinguishing populations during cellular plasmolysis.

作者信息

Gutiérrez-Medina Braulio

机构信息

Division of Advanced Materials, Instituto Potosino de Investigación Científica y Tecnológica, Camino a la Presa San José 2055, San Luis Potosí 78216, Mexico.

出版信息

MethodsX. 2024 Nov 6;13:103036. doi: 10.1016/j.mex.2024.103036. eCollection 2024 Dec.

DOI:10.1016/j.mex.2024.103036
PMID:39687588
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11647837/
Abstract

The analysis of geometrical cell shape is fundamental to understand motility, development, and responses to external stimuli. The moment invariants framework quantifies cellular shape and size, although its applicability has not been explored for rod-shaped bacteria. In this work, we use moment invariants to evaluate the extent of cell shape change (projected area and volume) during plasmolysis, as cells are subjected to hyperosmotic shock. The characteristic cell size descriptors width, length and area show systematic decrease as external salt (NaCl) conditions increase-except for high salt, where a small population of cells shows evidence of membrane rupture. We use these two-dimensional results to estimate cell volume during plasmolysis, finding a minimum volume that is not reduced further with increase in salt concentration. Next, we computed elongation and dispersion, metrics that quantify how cell shape is stretched out or differs from an ellipse, respectively. For dispersion, we observe the development of a long tail for the distribution at high salt. Moreover, the use of elongation-dispersion plots enables distinction of plasmolyzed and normal cells despite the presence of broad distributions. Altogether, a protocol is provided to evaluate bacterial shape, highlighting a set of metrics that help distinguish among bacterial populations.•Moment invariants enable quantitative description of bacterial morphology in two dimensions, and estimation of volume•We apply the moment invariants framework to describe changes in bacterial shape during plasmolysis•The proposed methodology shows suitability to distinguish among cellular populations.

摘要

分析细胞的几何形状对于理解细胞运动、发育以及对外部刺激的反应至关重要。矩不变量框架可量化细胞的形状和大小,尽管其在杆状细菌中的适用性尚未得到探索。在这项工作中,我们使用矩不变量来评估质壁分离过程中细胞形状变化(投影面积和体积)的程度,因为细胞受到了高渗冲击。随着外部盐(氯化钠)浓度的增加,细胞大小的特征描述符宽度、长度和面积呈现系统性下降——高盐情况除外,在高盐时一小部分细胞显示出膜破裂的迹象。我们利用这些二维结果来估计质壁分离过程中的细胞体积,发现存在一个最小体积,该体积不会随着盐浓度的增加而进一步减小。接下来,我们计算了伸长率和离散度,这两个指标分别量化了细胞形状是如何被拉长或与椭圆的差异程度。对于离散度,我们观察到在高盐时分布出现了长尾现象。此外,使用伸长率 - 离散度图能够区分质壁分离细胞和正常细胞,尽管存在广泛的分布。总之,我们提供了一个评估细菌形状的方案,突出了一组有助于区分细菌群体的指标。•矩不变量能够在二维层面上对细菌形态进行定量描述,并估计体积•我们应用矩不变量框架来描述质壁分离过程中细菌形状的变化•所提出的方法显示出区分细胞群体的适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/ce1268c52ccf/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/3d053410b1df/ga1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/dbeb380fee67/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/ffb645ac7fd5/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/d2f99ff31320/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/31ef9250915c/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/ce1268c52ccf/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/3d053410b1df/ga1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/dbeb380fee67/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/ffb645ac7fd5/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/d2f99ff31320/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/31ef9250915c/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ae3/11647837/ce1268c52ccf/gr5.jpg

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本文引用的文献

1
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Sci Rep. 2022 Mar 17;12(1):4614. doi: 10.1038/s41598-022-08613-2.
2
Microscopic impedance cytometry for quantifying single cell shape.用于量化单细胞形状的显微阻抗细胞术。
Biosens Bioelectron. 2021 Dec 1;193:113521. doi: 10.1016/j.bios.2021.113521. Epub 2021 Aug 2.
3
Advances and opportunities in image analysis of bacterial cells and communities.细菌细胞和群落的图像分析的进展和机遇。
FEMS Microbiol Rev. 2021 Aug 17;45(4). doi: 10.1093/femsre/fuaa062.
4
Cell segmentation methods for label-free contrast microscopy: review and comprehensive comparison.无标记对比显微镜的细胞分割方法:综述与综合比较。
BMC Bioinformatics. 2019 Jun 28;20(1):360. doi: 10.1186/s12859-019-2880-8.
5
TISMorph: A tool to quantify texture, irregularity and spreading of single cells.TISMorph:一种用于量化单细胞纹理、不规则性和扩散的工具。
PLoS One. 2019 Jun 3;14(6):e0217346. doi: 10.1371/journal.pone.0217346. eCollection 2019.
6
Quantitative Image Restoration in Bright Field Optical Microscopy.明场光学显微镜中的定量图像恢复
Biophys J. 2017 Nov 7;113(9):1916-1919. doi: 10.1016/j.bpj.2017.09.002. Epub 2017 Oct 4.
7
PaCeQuant: A Tool for High-Throughput Quantification of Pavement Cell Shape Characteristics.PaCeQuant:一种用于高通量量化路面细胞形状特征的工具。
Plant Physiol. 2017 Nov;175(3):998-1017. doi: 10.1104/pp.17.00961. Epub 2017 Sep 20.
8
DeconvolutionLab2: An open-source software for deconvolution microscopy.反卷积实验室2:一款用于反卷积显微镜的开源软件。
Methods. 2017 Feb 15;115:28-41. doi: 10.1016/j.ymeth.2016.12.015. Epub 2017 Jan 3.
9
MorphoGraphX: A platform for quantifying morphogenesis in 4D.形态学图形分析软件(MorphoGraphX):一个用于量化四维形态发生的平台。
Elife. 2015 May 6;4:05864. doi: 10.7554/eLife.05864.
10
Quantifying cell shape and gene expression in the shoot apical meristem using MorphoGraphX.使用MorphoGraphX对茎尖分生组织中的细胞形态和基因表达进行量化。
Methods Mol Biol. 2014;1080:121-34. doi: 10.1007/978-1-62703-643-6_10.