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从荷斯坦奶牛瘤胃液中分离出的编码维生素B生物合成的sp. SCR221107的全基因组序列。

Complete genome sequence of sp. SCR221107, encoding biosynthesis of vitamin B isolated from the rumen fluid of Holstein dairy cows.

作者信息

Baik Keun Sik, Ramos Sonny C, Na Sang Hoon, Kim Seon Ho, Son A Rang, Miguel Michelle, Lee Sang Suk

机构信息

Ruminant Nutrition and Anaerobe Laboratory, Department of Animal Science and Technology, Sunchon National University, Suncheon 57922, Korea.

Interdisciplinary Program in IT-Bio Convergence System (BK21 Plus), Suncheon National University, Suncheon 57922, Korea.

出版信息

J Anim Sci Technol. 2024 Nov;66(6):1291-1295. doi: 10.5187/jast.2024.e74. Epub 2024 Nov 30.

Abstract

sp. SCR221107 was isolated from the rumen fluid of healthy male Holstein dairy cows from a research farm at Suncheon, Jeollanam-do, Korea. sp. SCR221107 is a functional probiotic candidate that produces vitamin B. All sp. SCR221107 was sequenced using the PacBio RS II and Illumina HiSeq platforms and assembled . The complete genome sequence of sp. SCR221107 contained one circular chromosome (3,043,024 bp) with a guanine + cytosine (GC) content of 60.1%. Annotation analysis showed the presence of 2,639 protein-coding sequences, 15 rRNA genes, and 57 tRNA genes. Genome analysis found that sp. SCR221107 encodes various genes associated with vitamin B12 synthesis and transport. The genomic information provided a detailed understanding of sp. SCR221107, suggesting that this isolate may have potential probiotic applications.

摘要

菌株SCR221107是从韩国全罗南道顺天市一个研究农场的健康雄性荷斯坦奶牛瘤胃液中分离出来的。菌株SCR221107是一种可产生维生素B的功能性益生菌候选菌株。使用PacBio RS II和Illumina HiSeq平台对所有菌株SCR221107进行了测序并组装。菌株SCR221107的完整基因组序列包含一条环状染色体(3,043,024 bp),鸟嘌呤+胞嘧啶(GC)含量为60.1%。注释分析表明存在2,639个蛋白质编码序列、15个rRNA基因和57个tRNA基因。基因组分析发现菌株SCR221107编码与维生素B12合成和运输相关的各种基因。这些基因组信息提供了对菌株SCR221107的详细了解,表明该分离株可能具有潜在的益生菌应用价值。

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