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环状MIB1通过竞争性内源RNA相互作用网络抑制胶质瘤的发生和进展。

CircMIB1 inhibits glioma development and progression through a competing endogenous RNA interaction network.

作者信息

Chen Simin, Li Longping, Xu Wei, Xie Nanjiao, Xu Huiting, Zhou Yongjun, Zou Ying, Yi Kai, Liu Yi

机构信息

Department of Clinical Laboratory, Yiyang Central Hospital, Yiyang, Hunan, China.

Department of Emergency Medicine and Laboratory of Emergency Medicine, West China Hospital, West China School of Medicine, Sichuan University Chengdu, Chengdu, China.

出版信息

Front Mol Biosci. 2024 Dec 4;11:1513919. doi: 10.3389/fmolb.2024.1513919. eCollection 2024.

Abstract

INTRODUCTION

The critical role of circular RNAs as non-coding RNAs in glioma has been extensively investigated. Therefore, we aimed to explore the role and potential molecular mechanisms of circRNA-mind bomb homolog 1 (circMIB1) in gliomas.

METHODS

RNA sequencing was used to analyze the expression profiles of circRNAs in glioma tissues and normal brain tissues. Quantitative real-time polymerase chain reaction was implemented to examine the levels of circMIB1 in glioma cells and tissues. The circMIB1 was identified as a cyclic RNA molecule by DNA nucleic acid electrophoresis and ribonuclease R assay. The relationship between circMIB1 expression and the prognosis of glioma patients and its potential as a biomarker were analysed using Kaplan-Meier, Receiver operating characteristic curves, and Principal component analysis. Bioinformatics analysis predicted the miRNAs that bind to circMIB1 and their downstream targets, and analysed the functions of these genes.

RESULTS

Firstly, a novel circRNA molecule termed circMIB1 was identified and validated by RNA sequencing. The expression of circMIB1 was significantly downregulated in glioma cells and tissues, and was closely associated with the tumor grade and survival prognosis of patients with glioma. Hence, it may be useful as a biomarker for glioma. Secondly, it was predicted that circMIB1 binds to hsa-miR-1290 based on bioinformatics analysis, which was significantly upregulated in glioma cells and tissues, and correlated with the tumor grade and overall survival of patients. Thirdly, through a series of bioinformatics analyses identified six genes downstream of hsa-miR-1290 that were significantly associated with glioma expression and prognosis, these genes are associated with cell cycle, cell necrosis and cell circadian rhythms.

DISCUSSION

CircMIB1 may play a role in inhibiting glioma development through the hsa-miR-1290 competitive endogenous RNA interaction network, these findings provide new ideas and directions for the diagnosis and treatment of glioma.

摘要

引言

环状RNA作为非编码RNA在胶质瘤中的关键作用已得到广泛研究。因此,我们旨在探讨环状RNA- mind bomb同源物1(circMIB1)在胶质瘤中的作用及潜在分子机制。

方法

采用RNA测序分析胶质瘤组织和正常脑组织中环状RNA的表达谱。运用定量实时聚合酶链反应检测胶质瘤细胞和组织中circMIB1的水平。通过DNA核酸电泳和核糖核酸酶R检测鉴定circMIB1为环状RNA分子。使用Kaplan-Meier法、受试者工作特征曲线和主成分分析,分析circMIB1表达与胶质瘤患者预后的关系及其作为生物标志物的潜力。生物信息学分析预测与circMIB1结合的微小RNA及其下游靶点,并分析这些基因的功能。

结果

首先,通过RNA测序鉴定并验证了一种名为circMIB1的新型环状RNA分子。circMIB1在胶质瘤细胞和组织中的表达显著下调,且与胶质瘤患者的肿瘤分级和生存预后密切相关。因此,它可能作为胶质瘤的生物标志物。其次,基于生物信息学分析预测circMIB1与hsa-miR-1290结合,hsa-miR-1290在胶质瘤细胞和组织中显著上调,且与患者的肿瘤分级和总生存期相关。第三,通过一系列生物信息学分析,确定了hsa-miR-1290下游的六个基因,这些基因与胶质瘤的表达和预后显著相关,它们与细胞周期、细胞坏死和细胞昼夜节律有关。

讨论

CircMIB1可能通过hsa-miR-1290竞争性内源RNA相互作用网络在抑制胶质瘤发展中发挥作用,这些发现为胶质瘤的诊断和治疗提供了新的思路和方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/870f/11652353/1fd77c0198ef/fmolb-11-1513919-g001.jpg

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